View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11077_high_3 (Length: 468)
Name: NF11077_high_3
Description: NF11077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11077_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 31573025 - 31573486
Alignment:
| Q |
8 |
tgagatgaaggtaggtaactttgatgatatattggtctccaaataggaaggagtgaggctagcacagcatgacctagtcagggttatgctagcagtacta |
107 |
Q |
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| T |
31573025 |
tgagaagaaggtaggtaacttagatgatat--tggtctccaaataggaaggagtgaggctagcacagcatgacctagtcagggttatgctagcagtacta |
31573122 |
T |
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| Q |
108 |
ctcgtatggatatagtggctattttctactgtaccacnnnnnnntaccaccaaaacctatttcctatctatatnnnnnnnn-gtgagaaat-cggtgtcc |
205 |
Q |
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| T |
31573123 |
cttgtatggatatagcggctattttttactgtaccacaaaaaaataccaccaaaacctatttcctatctatataaaaaaaaagtgagaaattcggtgtcc |
31573222 |
T |
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| Q |
206 |
aaaaattattttcctattagtaatgcaaaaatcatggcactttaatacctattttgtgaaagagagtaatannnnnnngtggtacagtnnnnnnnnn-cg |
304 |
Q |
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| T |
31573223 |
aaaatttattttcccattagtaatgcaaaaatcatggcactttaatacctattttgtgaaagagagtaatctttttttgtggtatagtaaaaaaaaaacg |
31573322 |
T |
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| Q |
305 |
tatatagttccttcccaatactactatcgtataaccaaacctagatcatgctggcagcttcactttttcctttgtgatcataacaatattgctattgagt |
404 |
Q |
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| T |
31573323 |
tatatagttccttctcaatactactattgtataaccaaacctagatcatgctggcagcttcactttttcctttgtgatcataacaatattgctgttgagt |
31573422 |
T |
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| Q |
405 |
gatttacaggtatatatatggttttgttttgttacaacaaagaaacagtatggtagcactcact |
468 |
Q |
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| T |
31573423 |
gatttgcaggtatatatatggttttgttttgttacaacaaagaaacagtatgttagcactcact |
31573486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 381
Target Start/End: Complemental strand, 38348489 - 38348454
Alignment:
| Q |
346 |
tagatcatgctggcagcttcactttttcctttgtga |
381 |
Q |
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| T |
38348489 |
tagatcatgctggcagcttcactttttcctttgtga |
38348454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 38348589 - 38348544
Alignment:
| Q |
48 |
aaataggaaggagtgaggctagcacagcatgacctagtcagggtta |
93 |
Q |
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| T |
38348589 |
aaataggaaagagtgaggctgtcacagcatgacctagtcaaggtta |
38348544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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