View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11077_high_7 (Length: 252)
Name: NF11077_high_7
Description: NF11077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11077_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 36607088 - 36606865
Alignment:
| Q |
19 |
aggctggtggtatatcaacacagaaaattaatacagagaccttgtctaaatttccgaaatccgattttggtgtaaatggtttgaagcctaatgtagaggt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36607088 |
aggctggtggtatatcaacacagaaaattaatacagaaaccttgtctaaatttccgaaatccgattttggtgtaaatggtttgaagcctaatgtagaggt |
36606989 |
T |
|
| Q |
119 |
gccaaccttagcaccttcaaaagcaacccttcattcttcaaaacgaatccagggatcacatacttcaaaacatcaggtacattaccattagaatgatata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36606988 |
gccaaccttagcaccttcaaaagcaacccttcattcttcaaaacgaatccagggatcacatacttcaaaatatcaggtacattaccattagaatgatata |
36606889 |
T |
|
| Q |
219 |
tttgttacctataatgatctccct |
242 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36606888 |
tttgttacctataatgatctccct |
36606865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University