View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11077_low_1 (Length: 802)
Name: NF11077_low_1
Description: NF11077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11077_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 604; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 11 - 687
Target Start/End: Original strand, 31605757 - 31606432
Alignment:
| Q |
11 |
gtgagatgaagcggttgataagataaatgcaacggaaaatatggattcatagagaacttcatcagggtttatcattagttttcttagtagaagtgccatt |
110 |
Q |
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|||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31605757 |
gtgaaatgaagcagttgataagataaatgcaacagaaaatatggattcatagagaacttcatcagggtttatcattagttttcttagtagaagtgccgtt |
31605856 |
T |
|
| Q |
111 |
gatgtgttcattattagtggtgcaaaaaatgaaaatattccaatcgcccaagcttttttccctgatcttacaaccagacttagatcgatttttattccga |
210 |
Q |
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||| | ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605857 |
gatacgctcattatcagtggtgcgaaaaatgaaagtattccaatcgcccaagcttttttccctgatcttacaaccagacttagatcgatttttattccga |
31605956 |
T |
|
| Q |
211 |
ttaagaacatgtacatcatgcatccaaaaaatgcgattgtctcacttacgtagaatgtttttggtgggaatagccannnnnnnatgaactcactttgccc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31605957 |
ttaagaacatgtacatcatgcatccaaaaaatgcgattgtctcacttacgtagaatgtttttggtgggaatagccatttttttatgaactcactttgccc |
31606056 |
T |
|
| Q |
311 |
cataactgatggtcctgctattatgccagcctgaatacatttcgaaaacaaaagagtttattagcatgttttacataaggatacattctcaaagaaaatg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31606057 |
cataactgatggtcctgctattatgccagcctgaatacatttcgaaaacaaaagagtttattagcatgttttacataaggatacattctcaaagaaaatg |
31606156 |
T |
|
| Q |
411 |
ctaaagataagaaattaatccagttttaaaatttcacatgatacttatgtagtataaaatttacatatctaactctaggtttgcagataacaatatccta |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31606157 |
ctaaagataagaaattaatccagttttaaaatttcacatgatacttatgtagtataaaatttacatatctaactctaggtttgcagataacaatatccta |
31606256 |
T |
|
| Q |
511 |
atccaaatatgcgagctaaagattaacgtaatttcagtgatcatttttaaatgtttgttattctcatttgatcaacacctataatttcaatgtattaact |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31606257 |
atccaaatatgcgagctaaagattaacgtaatttcagtgatcatttttaaatgtttgttattctcatttgatcaacacctataatttcaatgtattaact |
31606356 |
T |
|
| Q |
611 |
atatatcttgatacatcaatgaccaatgaagtttcaatacttttctttaaagctattatcagaatagcaaatatatc |
687 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31606357 |
atatatcttgatacatc-atgaccaatgaagtttcaatacttttctttaatgctattatcagaatagcaaatatatc |
31606432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 122 - 398
Target Start/End: Original strand, 31596104 - 31596380
Alignment:
| Q |
122 |
tattagtggtgcaaaaaatgaaaatattccaatcgcccaagcttttttccctgatcttacaaccagacttagatcgatttttattccgattaagaacatg |
221 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| ||| | || |||||||||||||| ||| |||||||||| | |
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| T |
31596104 |
tattagtggtgataaaaatgaaaatattccaattgcccaagctcttttccctgatcttataacaatacctagatcgatttttactccaattaagaacaag |
31596203 |
T |
|
| Q |
222 |
tacatcatgcatccaaaaaatgcgattgtctcacttacgtagaatgtttttggtgggaatagccannnnnnnatgaactcactttgccccataactgatg |
321 |
Q |
| |
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||| |||||| ||| |||||| |||||||||||||| |||||||||| |||||||||||||||| || ||||| |||| |||| || || | |
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| T |
31596204 |
aacagcatgcacccataaaatgagattgtctcacttatgtagaatgttcttggtgggaatagccattttcttataaactcgctttctcccagaaacgacg |
31596303 |
T |
|
| Q |
322 |
gtcctgctattatgccagcctgaatacatttcgaaaacaaaagagtttattagcatgttttacataaggatacattc |
398 |
Q |
| |
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| T |
31596304 |
gtcctaatatcaagccagcctgaatacatttcaaaaacaaaacaatttttcaacatgttttacataaggaaacattc |
31596380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 118 - 383
Target Start/End: Original strand, 31580241 - 31580506
Alignment:
| Q |
118 |
tcattattagtggtgcaaaaaatgaaaatattccaatcgcccaagcttttttccctgatcttacaaccagacttagatcgatttttattccgattaagaa |
217 |
Q |
| |
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|||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||| |
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| T |
31580241 |
tcattaatagtggtacaaaaaatgaaaatgttccaattgcccaagcttttttccctgatcttgtaacaagacttagatcgatttttactccaattaagaa |
31580340 |
T |
|
| Q |
218 |
catgtacatcatgcatccaaaaaatgcgattgtctcacttacgtagaatgtttttggtgggaatagccannnnnnnatgaactcactttgccccataact |
317 |
Q |
| |
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|| | ||||||| |||||| ||| |||||||| || | | ||||||||||| |||| |||| ||| |||| |||||||||||| | |||| |
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| T |
31580341 |
caagaacatcattatcccaaaatatgagattgtctggctaatgaagaatgttttttgtggaaatatccatttttttatgagctcactttgcccgaaaact |
31580440 |
T |
|
| Q |
318 |
gatggtcctgctattatgccagcctgaatacatttcgaaaacaaaagagtttattagcatgtttta |
383 |
Q |
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| T |
31580441 |
gatggacctagtaccaagccagcctgaatacatttcaaaaacaaaagaattaattagcatgtttta |
31580506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 138 - 383
Target Start/End: Original strand, 31564718 - 31564963
Alignment:
| Q |
138 |
aatgaaaatattccaatcgcccaagcttttttccctgatcttacaaccagacttagatcgatttttattccgattaagaacatgtacatcatgcatccaa |
237 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||| ||||| | | | ||| ||||||| | | ||| || ||||| || |||||||||| |||| |
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| T |
31564718 |
aatgaaactattccaattgcccaagcttttttccctaatcttgtcataatagttacatcgattctaactccaatcaagaaattgaacatcatgcacccaa |
31564817 |
T |
|
| Q |
238 |
aaaatgcgattgtctcacttacgtagaatgtttttggtgggaatagccannnnnnnatgaactcactttgccccataactgatggtcctgctattatgcc |
337 |
Q |
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|| |||||||||||| | || ||| ||||||||||||||||||||||| | |||||||||||||| |||| |||||||| || ||||| |
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| T |
31564818 |
aatatgcgattgtctggcatatgtaaaatgtttttggtgggaatagccatttttttagcaactcactttgcccgataatagatggtccaagcatcatgcc |
31564917 |
T |
|
| Q |
338 |
agcctgaatacatttcgaaaacaaaagagtttattagcatgtttta |
383 |
Q |
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| T |
31564918 |
accctgaatacatttgaaaaacaaaagagttaactatcatgtttta |
31564963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 540 - 641
Target Start/End: Original strand, 31582220 - 31582319
Alignment:
| Q |
540 |
aatttcagtgatcatttttaaatgtttgttattctcatttgatcaacacctataatttcaatgtattaactatatatcttgatacatcaatgaccaatga |
639 |
Q |
| |
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||||||| ||||||||| |||| |||||||||||||||||||||||| | ||||||||||||||| ||| ||| ||||||||||| ||||||||||| |
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| T |
31582220 |
aatttcaatgatcatttggaaatatttgttattctcatttgatcaaca--tctaatttcaatgtattcacttaataacttgatacatcgatgaccaatga |
31582317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 748 - 780
Target Start/End: Original strand, 31606482 - 31606514
Alignment:
| Q |
748 |
ccacatcagcaacatttgttagcattatgccct |
780 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
31606482 |
ccacatcagcaacatttgttagcattatgccct |
31606514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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