View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11077_low_5 (Length: 313)
Name: NF11077_low_5
Description: NF11077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11077_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 8696594 - 8696297
Alignment:
| Q |
1 |
attctactactagtactcacaattataaatgtttaattactctacattactattattaaacctatgtgattcaatagtttcatatatgttaatctgaaaa |
100 |
Q |
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| T |
8696594 |
attctactactagtactcacaattataaatgtttaattactctacattactattattaaacctatgtgattcaatagtttcatatatgttaatctgaaaa |
8696495 |
T |
|
| Q |
101 |
tttcaggtcagaagaacaagaattagtgacagaatcaagaaactgcaaggtcttttcccaaaatcagataaggtattttaaccttctcaaaagcatatca |
200 |
Q |
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| T |
8696494 |
tttcaggtcagaagaacaagaattagtgacagaatcaagaaactgcaaggtcttttcccaaaatcagataaggtattttaacattctcaaaagcatatca |
8696395 |
T |
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| Q |
201 |
tatgcattttagtaacgcagacatggataaaggacatgacactggcaccgacatcagtaatgactttaaaaaatgaaagtaattgaatgtcatatgtg |
298 |
Q |
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| T |
8696394 |
tatgcattttagtaacgcagacatggatacaggacatgacattggcaccgacatcagtaatgactttaaaaaatgaaagtaattgaatgtcatatgtg |
8696297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 9048481 - 9048184
Alignment:
| Q |
1 |
attctactactagtactcacaattataaatgtttaattactctacattactattattaaacctatgtgattcaatagtttcatatatgttaatctgaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9048481 |
attctactactagtactcacaattataaatgtttaattactctacattactattattaaacctatgtgattcaatagtttcatatatgttaatctgaaaa |
9048382 |
T |
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| Q |
101 |
tttcaggtcagaagaacaagaattagtgacagaatcaagaaactgcaaggtcttttcccaaaatcagataaggtattttaaccttctcaaaagcatatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9048381 |
tttcaggtcagaagaacaagaattagtgacagaatcaagaaactgcaaggtcttttcccaaaatcagataaggtattttaacattctcaaaagcatatca |
9048282 |
T |
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| Q |
201 |
tatgcattttagtaacgcagacatggataaaggacatgacactggcaccgacatcagtaatgactttaaaaaatgaaagtaattgaatgtcatatgtg |
298 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9048281 |
tatgcattttagtaacgcagacatggatacaggacatgacattggcaccgacatcagtaatgactttaaaaaatgaaagtaattgaatgtcatatgtg |
9048184 |
T |
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