View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11077_low_6 (Length: 269)
Name: NF11077_low_6
Description: NF11077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11077_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 12872470 - 12872707
Alignment:
| Q |
18 |
tcttataggtctgagatatgattatcaatacaaacattccttgattcttctgcatgttagcttcatactgaatttatttacatatattgatcattccaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12872470 |
tcttataggtctgagatatgattatcaatacaaacattccttgattcttctgcatgttagctgcatactgaatttatttacatatattgatcattccaaa |
12872569 |
T |
|
| Q |
118 |
tcagaatctcatggactgtaaa-atatcattcaatgaatgtgttttcactttctaatgatttcagggttatttaaatatgtagctgacttaattaaagat |
216 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12872570 |
-----aactcatggactgtaaacatatcattcaatgtttgtgttttcactttctaatgatttcagggttatttaaatatgtagctgacttaattaaagat |
12872664 |
T |
|
| Q |
217 |
aacaataacatgagtacagagtcccattgcagtatactctctg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12872665 |
aacaataacatgagtacagagtcccattgcagtatactctctg |
12872707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 27769618 - 27769861
Alignment:
| Q |
20 |
ttataggtctgagatatgattatcaatacaaacattccttgattcttctgcatgttagcttcatactgaatttatttacatatattgatcattccaaatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27769618 |
ttataggtctgagatatgattatcaatacaaacattccttgattcttctccatgttagctgcatactgaatttatttacatatattgatcattccaaatc |
27769717 |
T |
|
| Q |
120 |
agaatctcatggactgtaa-aatatcattcaatgaatgtgttttcactttctaatgatttcagggttatttaaatatgtagctgacttaattaaagataa |
218 |
Q |
| |
|
|||| ||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
27769718 |
agaaactcatggaccgtaagcatatcatttaatgtttgtgttttcactttctaatgatttcaggattatttaaatatgtagttgacttaattaaagataa |
27769817 |
T |
|
| Q |
219 |
caataacatgagtacagagtcccattgcagtatactctctgctc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27769818 |
caataacatgagtacagagtcccattgcagtatactctctgctc |
27769861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University