View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11077_low_8 (Length: 240)
Name: NF11077_low_8
Description: NF11077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11077_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28014264 - 28014042
Alignment:
| Q |
1 |
caacgatctacaacatacaatttgtcacttttactcatgccaggagaaatttttcaatgcaaaacagcttgattaggtgtgacagtctggttaataacca |
100 |
Q |
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| T |
28014264 |
caacgatctacaacacacaatttgtcacttttacttatgccaggagaaatttttcaatgcaaaacagcttgattaggtgtgacagtctggttaataacca |
28014165 |
T |
|
| Q |
101 |
gtctccggatatcgtagaattttttcctgccacaccagatcgagtaattgtctaagataaatgatactgataacatcaaggagagcaaacatttatattt |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28014164 |
gtctccggatatcgtggaattttttcctgccacaccagatcgagtaattgtctaagataaatgataccgataacatcaaggagagcaaacatttatattt |
28014065 |
T |
|
| Q |
201 |
ttggaactaaaatatggactaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
28014064 |
ttggaactaaaatatggactaat |
28014042 |
T |
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