View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11077_low_9 (Length: 239)
Name: NF11077_low_9
Description: NF11077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11077_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 31573731 - 31573509
Alignment:
| Q |
17 |
agttatgttgctacgttcacctccacctttaatcccaccaacccctttttcacattctgccaatccttcttctatttatacactactaaaccaacttgtt |
116 |
Q |
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| T |
31573731 |
agttatgttgctacgttcacctccacctttaatcccaccaacccctttttcacattctgccaatccttcttctatttatacactactaaaccaacttgtt |
31573632 |
T |
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| Q |
117 |
ttattgtagcactttctggccttaattactctcagtttcccattctcttctctaagttttatgttactatacagttttgacatgaaacttgtcccaagtg |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31573631 |
ttattgtagcactttctggccttaactactctcagtttcccattctcttctctaagttttatgttactagacagttttgacatgaaacttgtcccaagtg |
31573532 |
T |
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| Q |
217 |
ttagtttgatctaaaatattcct |
239 |
Q |
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| T |
31573531 |
ttagtttgatctaaaatattcct |
31573509 |
T |
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