View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11078_high_4 (Length: 212)
Name: NF11078_high_4
Description: NF11078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11078_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 40669192 - 40669372
Alignment:
| Q |
18 |
gttgccattgaaaaatgattgcaaagttgaggtttcaagaataatatcgttgtcgggacgtccttgctgattcctgtaaaatatcttgccatgaaatgca |
117 |
Q |
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| T |
40669192 |
gttgccattgaaaaatgattgcaaagttgaggtttcaagaataatatcgttgtcgggacgtccttgctgattcctgtaaaatatcttgccatgaaatgca |
40669291 |
T |
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| Q |
118 |
tcgtggtggtaggaaattcgaagatggccgttagggtttgaaagcaagagttttatgttccattcggctgtgagttctgtg |
198 |
Q |
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| T |
40669292 |
tcgtggtggtaggaaattcgaagatggccgttagggtttgaaagcaagagttttatgttccattcggctgagagttttgtg |
40669372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 40662932 - 40663038
Alignment:
| Q |
92 |
tgtaaaatatcttgccatgaaatgcatcgtggtggtaggaaattcgaagatggccgttagggtttgaaagcaagagttttatgttccattcggctgtgag |
191 |
Q |
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| T |
40662932 |
tgtaaaatatcttgggatcaaatgaatcgtggtggtatgagattcgcaaatggtagttagggtttgatagggagagtgtaattttccattcagctgtgag |
40663031 |
T |
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| Q |
192 |
ttctgtg |
198 |
Q |
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| T |
40663032 |
ttttgtg |
40663038 |
T |
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