View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11078_low_2 (Length: 248)

Name: NF11078_low_2
Description: NF11078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11078_low_2
NF11078_low_2
[»] chr3 (1 HSPs)
chr3 (1-166)||(4287870-4288031)
[»] chr7 (6 HSPs)
chr7 (2-136)||(16803398-16803532)
chr7 (2-57)||(1781018-1781073)
chr7 (14-136)||(29542272-29542395)
chr7 (6-136)||(7228493-7228624)
chr7 (2-52)||(8876307-8876357)
chr7 (2-52)||(26572934-26572984)
[»] chr1 (7 HSPs)
chr1 (2-131)||(15877644-15877774)
chr1 (2-136)||(33078706-33078841)
chr1 (2-68)||(19709111-19709176)
chr1 (80-133)||(21501875-21501928)
chr1 (77-136)||(26780512-26780571)
chr1 (9-147)||(15244138-15244275)
chr1 (2-49)||(39440755-39440802)
[»] chr2 (3 HSPs)
chr2 (2-136)||(33856031-33856166)
chr2 (2-30)||(5369823-5369851)
chr2 (100-136)||(25895392-25895428)
[»] chr4 (4 HSPs)
chr4 (2-129)||(51461425-51461553)
chr4 (2-129)||(50979313-50979438)
chr4 (75-136)||(5066727-5066788)
chr4 (85-133)||(7355044-7355092)
[»] chr8 (5 HSPs)
chr8 (2-68)||(25233529-25233595)
chr8 (54-136)||(25988747-25988830)
chr8 (2-57)||(30122572-30122627)
chr8 (2-57)||(7635053-7635108)
chr8 (76-133)||(22541493-22541551)
[»] chr5 (3 HSPs)
chr5 (3-136)||(16510946-16511078)
chr5 (75-136)||(27893306-27893367)
chr5 (75-131)||(20625934-20625990)
[»] chr6 (2 HSPs)
chr6 (2-136)||(18626559-18626694)
chr6 (75-136)||(6633304-6633365)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 4288031 - 4287870
Alignment:
Q  1 ccttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttgatggtg-attggagaggccaagttccagctag 99  Q
    |||||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||    
T  4288031 ccttgtagtggttggccttgtactgtaagaagataaccacatgctagtgccaagggttcgaaaatatgatagtgaattggagaggccaagttccagctag 4287932  T
Q  100 ggttaacagctttacagttctcactccatctcatcttttatatagatgtgagtgctagattttagag 166  Q
    |||||     |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4287931 ggtta-----tttagagttctcactccatctcatcttctatatagatgtgagtgctagattttagag 4287870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 16803398 - 16803532
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttgatggtgattggagaggccaagttccagctaggg 101  Q
    |||| |||| ||| ||||||||||| ||| || |||||||||||||||||| |||| ||||| |||||| |||||| |||||||||||||||| ||||||    
T  16803398 cttgaagtgattgtccttgtactatgaaaggacaaccacatgttagtgccaagggtccgaaattttgattgtgatttgagaggccaagttccaactaggg 16803497  T
Q  102 ttaacagctttacagttctcactccatctcatctt 136  Q
    ||| |||||||| |||||||||| |||||||||||    
T  16803498 ttagcagctttagagttctcactacatctcatctt 16803532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 1781073 - 1781018
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggt 57  Q
    ||||||||||||| | ||||||||||||  ||||||||||||||||||||| ||||    
T  1781073 cttgtagtggttgacattgtactataaaccgataaccacatgttagtgccaagggt 1781018  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 29542395 - 29542272
Alignment:
Q  14 ggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaattt-gatggtgattggagaggccaagttccagctagggttaacagcttt 112  Q
    ||||||||| ||||||| |  ||||||||||||||||||  ||||||||| |||  ||||||| |  | |||||||||||||||||| ||||   ||  |    
T  29542395 ggccttgtaatataaaagggcaaccacatgttagtgccaaaggttcgaaattttacatggtgaatttaaaggccaagttccagctagagttagttgcact 29542296  T
Q  113 acagttctcactccatctcatctt 136  Q
    | |||||||||| |||||||||||    
T  29542295 agagttctcacttcatctcatctt 29542272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 7228493 - 7228624
Alignment:
Q  6 tagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttg--atggtgattggagaggccaagttccagctagggtt 103  Q
    |||| |||||||||||||||||||| || ||| |  ||||||| ||| |||| | ||||||||  || |  ||| |||||||||||||| ||||| ||||    
T  7228493 tagttgttggccttgtactataaaaggacaacaatgtgttagtaccaagggtccaaaaatttgtaataga-attcgagaggccaagttctagctaaggtt 7228591  T
Q  104 aacagctttacagttctcactccatctcatctt 136  Q
    |  ||||||| |||||| | |||||||||||||    
T  7228592 agaagctttagagttctaattccatctcatctt 7228624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 8876307 - 8876357
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgcca 52  Q
    |||||||||||||| |||||||||||||| || ||| | ||||||||||||    
T  8876307 cttgtagtggttggtcttgtactataaaaggacaacgatatgttagtgcca 8876357  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 26572984 - 26572934
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgcca 52  Q
    |||||||||| | |||||||||||||||| || || |||||||||||||||    
T  26572984 cttgtagtggctagccttgtactataaaaggaaaatcacatgttagtgcca 26572934  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 15877644 - 15877774
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttgatggtga-ttggagaggccaagttccagctagg 100  Q
    ||||||| ||||||||||||||||||||| |  ||||||||||| |||||| | ||  ||||||||||| |||| ||||||||||||||||| | |||||    
T  15877644 cttgtagaggttggccttgtactataaaaggtcaaccacatgttggtgccatgagtctgaaaatttgatagtgaattggagaggccaagttctacctagg 15877743  T
Q  101 gttaacagctttacagttctcactccatctc 131  Q
    |||| |||||||  |||||||||||||||||    
T  15877744 gttagcagctttggagttctcactccatctc 15877774  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 33078706 - 33078841
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttgatggtg-attggagaggccaagttccagctagg 100  Q
    |||||||||||||||||||||||| |||| || |||||||||||  || ||  ||| | |||||||||| ||| |||| ||| ||||||||| |||||||    
T  33078706 cttgtagtggttggccttgtactaaaaaaggacaaccacatgttgatgtcaatggtccaaaaatttgatagtgaattgaagacgccaagttctagctagg 33078805  T
Q  101 gttaacagctttacagttctcactccatctcatctt 136  Q
    ||||  | ||||| ||| ||||||||||||||||||    
T  33078806 gttagaaactttagagtactcactccatctcatctt 33078841  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 19709111 - 19709176
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttg 68  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||| | |||||| ||||||||    
T  19709111 cttgtagtggttgaccttgtactataaaatgacaaccacatgttagtgctaagggttc-aaaatttg 19709176  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 21501875 - 21501928
Alignment:
Q  80 agaggccaagttccagctagggttaacagctttacagttctcactccatctcat 133  Q
    ||||||||||||| |||||||||||  ||||||| |||||||||||||||||||    
T  21501875 agaggccaagttctagctagggttagaagctttagagttctcactccatctcat 21501928  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 26780571 - 26780512
Alignment:
Q  77 tggagaggccaagttccagctagggttaacagctttacagttctcactccatctcatctt 136  Q
    ||||||||||| ||| ||||||||||||  ||||||| |||||||| |||||||||||||    
T  26780571 tggagaggccaggtttcagctagggttagtagctttagagttctcattccatctcatctt 26780512  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 15244138 - 15244275
Alignment:
Q  9 tggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatt-tgatggtgattggagaggccaagttccagctagggttaaca 107  Q
    |||||||||||| ||||||||| || |||||||||||||| ||| ||| || |||||| |     ||| | ||| ||||||||| |||||| ||||| ||    
T  15244138 tggttggccttgaactataaaaggacaaccacatgttagtaccaaggg-tcaaaaattgtacacttgaattgagtggccaagtt-cagctatggttagca 15244235  T
Q  108 gctttacagttctcactccatctcatcttttatatagatg 147  Q
    ||  || |||||||||||||||||||||| | ||||||||    
T  15244236 gcactagagttctcactccatctcatcttctctatagatg 15244275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 39440802 - 39440755
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtg 49  Q
    |||||||||||||| ||| |||||||||| || |||||||||||||||    
T  39440802 cttgtagtggttggtcttatactataaaaggacaaccacatgttagtg 39440755  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 33856166 - 33856031
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttgatggtgat-tggagaggccaagttccagctagg 100  Q
    |||| ||||||||| |||||||||||||| || |||||  |||| ||| || ||||||||||| ||| | ||||  || ||||||||||||| |||||||    
T  33856166 cttggagtggttggtcttgtactataaaaggaaaaccaagtgttggtgtcaagggttcgaaaagttgttagtgaactgtagaggccaagttctagctagg 33856067  T
Q  101 gttaacagctttacagttctcactccatctcatctt 136  Q
    |||| |  ||||| | ||||||||||||||||||||    
T  33856066 gttagcgactttagaattctcactccatctcatctt 33856031  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 5369823 - 5369851
Alignment:
Q  2 cttgtagtggttggccttgtactataaaa 30  Q
    |||||||||||||||||||||||||||||    
T  5369823 cttgtagtggttggccttgtactataaaa 5369851  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 25895428 - 25895392
Alignment:
Q  100 ggttaacagctttacagttctcactccatctcatctt 136  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  25895428 ggttagcagctttatagttctcactccatctcatctt 25895392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 51461425 - 51461553
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttgatggtga-ttggagaggccaagttccagctagg 100  Q
    |||||||||||| |||||||| ||||||| || ||| |  || | |||||| |||| |||||||||  | |||| ||||||||||||||||||||  |||    
T  51461425 cttgtagtggtttgccttgtaatataaaaggacaactatgtgatggtgccaagggtccgaaaatttattagtgaattggagaggccaagttccagtcagg 51461524  T
Q  101 gttaacagctttacagttctcactccatc 129  Q
     ||||||| |||| |||||||||||||||    
T  51461525 tttaacagttttagagttctcactccatc 51461553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 50979313 - 50979438
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttgatggtga-ttggagaggccaagttccagctagg 100  Q
    ||||||||||||||||||||| | ||||| ||   ||||||||| ||| || |||| |||||||||||| |||| ||| || ||||||||||||| ||||    
T  50979313 cttgtagtggttggccttgtattgtaaaagga---ccacatgttggtggcaagggtccgaaaatttgattgtgaattgaaggggccaagttccagttagg 50979409  T
Q  101 gttaacagctttacagttctcactccatc 129  Q
    |||| ||| |||| |||||  ||||||||    
T  50979410 gttagcaggtttagagttcgaactccatc 50979438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 5066727 - 5066788
Alignment:
Q  75 attggagaggccaagttccagctagggttaacagctttacagttctcactccatctcatctt 136  Q
    ||||||||||||| ||| |  ||| ||||||||||||||  | |||||||||||||||||||    
T  5066727 attggagaggccaggttacgactacggttaacagctttagcgatctcactccatctcatctt 5066788  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 7355092 - 7355044
Alignment:
Q  85 ccaagttccagctagggttaacagctttacagttctcactccatctcat 133  Q
    |||||||||||||||||||||||||  || ||||||||||  |||||||    
T  7355092 ccaagttccagctagggttaacagcactagagttctcactttatctcat 7355044  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 25233529 - 25233595
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttg 68  Q
    ||||||||||||||||||||||||||||| || |||||  ||||||||||| ||||  |||||||||    
T  25233529 cttgtagtggttggccttgtactataaaaggacaaccatgtgttagtgccaagggtctgaaaatttg 25233595  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 25988747 - 25988830
Alignment:
Q  54 gggttcgaaaatttgatggtga-ttggagaggccaagttccagctagggttaacagctttacagttctcactccatctcatctt 136  Q
    |||| |||||||||| | |||| |||||||||| ||||| |||||||||||| |||||||| |||||||| |  ||||||||||    
T  25988747 gggtccgaaaatttgttagtgaattggagaggctaagtttcagctagggttagcagctttaaagttctcattttatctcatctt 25988830  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 30122627 - 30122572
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggt 57  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||||    
T  30122627 cttgtagtggttggccttgtactataaaaggaaaaccacattttagtaccaagggt 30122572  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 7635053 - 7635108
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggt 57  Q
    |||| ||||| |||||||||||||||||| || |||||||||| ||||||| ||||    
T  7635053 cttgcagtggctggccttgtactataaaaggacaaccacatgtgagtgccaagggt 7635108  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 22541493 - 22541551
Alignment:
Q  76 ttggagaggccaagttccagcta-gggttaacagctttacagttctcactccatctcat 133  Q
    ||||||||| ||||||||||||| |||||| |||||||| |||| ||| ||||||||||    
T  22541493 ttggagaggacaagttccagctatgggttagcagctttagagttttcattccatctcat 22541551  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 16510946 - 16511078
Alignment:
Q  3 ttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttgatggtgattggagaggccaagttccagctagggt 102  Q
    ||||| ||||| |||||||||||||||| || ||| ||||||| |||  |  |||||||||| ||||| |||| |   |||||  ||||| ||||||||     
T  16510946 ttgtaatggtttgccttgtactataaaaggacaactacatgttggtgttaaaggttcgaaaaattgatagtgaatttcgaggcagagttctagctaggg- 16511044  T
Q  103 taacagctttacagttctcactccatctcatctt 136  Q
    ||| ||||||| |||||||| |||||||||||||    
T  16511045 taatagctttatagttctcattccatctcatctt 16511078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 27893306 - 27893367
Alignment:
Q  75 attggagaggccaagttccagctagggttaacagctttacagttctcactccatctcatctt 136  Q
    |||||||||||||||||||| ||||||||| |||||||| |||||||| | | |||||||||    
T  27893306 attggagaggccaagttccatctagggttagcagctttagagttctcatttcttctcatctt 27893367  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 20625934 - 20625990
Alignment:
Q  75 attggagaggccaagttccagctagggttaacagctttacagttctcactccatctc 131  Q
    |||||| ||||||| ||||||||||||||||||  |||| |||||||||||||||||    
T  20625934 attggataggccaaattccagctagggttaacaattttagagttctcactccatctc 20625990  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 18626559 - 18626694
Alignment:
Q  2 cttgtagtggttggccttgtactataaaaagataaccacatgttagtgccacgggttcgaaaatttga-tggtgattggagaggccaagttccagctagg 100  Q
    |||||||||| ||||| |||| ||||||| || | |||  ||||||||||| |||||||||||||    |  | ||||||||||||| ||| ||||||||    
T  18626559 cttgtagtgggtggccatgtattataaaaggacacccatgtgttagtgccaagggttcgaaaattcaccttataattggagaggccaggttacagctagg 18626658  T
Q  101 gttaacagctttacagttctcactccatctcatctt 136  Q
    |||| || ||||| || | ||| |||||||||||||    
T  18626659 gttatcaactttagagatttcattccatctcatctt 18626694  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 6633365 - 6633304
Alignment:
Q  75 attggagaggccaagttccagctagggttaacagctttacagttctcactccatctcatctt 136  Q
    ||||||||||||| ||| | |||||||||| ||| |||| |||||||| |||||||||||||    
T  6633365 attggagaggccatgttacggctagggttatcagttttagagttctcattccatctcatctt 6633304  T

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