View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11079_low_1 (Length: 779)
Name: NF11079_low_1
Description: NF11079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11079_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 141 - 764
Target Start/End: Original strand, 2018785 - 2019407
Alignment:
| Q |
141 |
ttgcattgtgtaacattttgaaataattggaacaaacatttttgtcacattgatgaatgatgatccttggatctgtgatctatcctataaacaggaatcc |
240 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2018785 |
ttgcattctgtaacattttgaaataattggaacaaacatttttgtcacattga---atgatgatccttggatctgtgatctatcctataaacaggaatcc |
2018881 |
T |
|
| Q |
241 |
aagtgtcaannnnnnnggttctgctggcgagggaatgaaaaattatctttacactgattatctgaacatctctgtcagttgcattatctcaatttgaaat |
340 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2018882 |
aagtgtcaatttttttggttctgctggcgggggaatgaaaaattatctttacactgattatctgaacatctctgtcagttgcattatctcaatttgaaat |
2018981 |
T |
|
| Q |
341 |
aattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttga |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2018982 |
aattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttga |
2019081 |
T |
|
| Q |
441 |
agataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcctccactcttattcatggttacgcatgctactatgttg-att |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2019082 |
agataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcctccactcttattcatggttacgcatgctactatgttgtatt |
2019181 |
T |
|
| Q |
540 |
tcagtatagaaatatagcctattgtagctgtgtatagcctgtagaataacagctctcacatctagctagtctaagagagatttctaactaacggaatcaa |
639 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
2019182 |
gcagtatagaaatatagcctattgtagctgtgtatagcctgtagaataacagctctcacatctacctagtctaagagagatttctaactaactgaatcaa |
2019281 |
T |
|
| Q |
640 |
atcagttagagggatttgacctctataaataccaatcatcctgtaatcattactaaacgacgatcaatgaagaatattcaaattccc-ctcatattctct |
738 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
2019282 |
atcagttagagggatttgacctctataaataccaatcatcctgtaatcattactaaacgttgatcaatgaagaatattcagattccctctcatattctct |
2019381 |
T |
|
| Q |
739 |
ttcatatctatttctcaaagataact |
764 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
2019382 |
ttcatatctatttctcaaagataact |
2019407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 1989569 - 1989776
Alignment:
| Q |
1 |
caagttccatgcat-atttttagctt-gtttgtcctaaattgcttcttggatgagtgaggagggaatgatcttagtttagtatttatttgaatattaaat |
98 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1989569 |
caagttccatgcattatttttagctttgtttgtcctaaattgcttcttggatgagtgaggagggaatgatcttagtttagtatttatttgaatattaaat |
1989668 |
T |
|
| Q |
99 |
tattaatattgtatattctttaagttttatgatcttttactgttgcattgtgtaacattttgaaataattggaacaaacatttttgtcacattgatgaat |
198 |
Q |
| |
|
||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
1989669 |
tat--atattgtatactttttaagttttatgatcttttactgttgcattgtgtaacattttgaaataattggaacaaacttttttgtatcattgatgaat |
1989766 |
T |
|
| Q |
199 |
gatgatcctt |
208 |
Q |
| |
|
|||||||||| |
|
|
| T |
1989767 |
gatgatcctt |
1989776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 307 - 517
Target Start/End: Original strand, 2035769 - 2035978
Alignment:
| Q |
307 |
catctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggat |
406 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||| | |||||||||||||| ||||||| |||| |||| ||||||||||| ||||||| |
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|
| T |
2035769 |
catctctgtcacttgcactatct-aatttgaaataattgcttttcctttgtagaatggacacattaagaaaacatcttcccgtttctggttctgagggat |
2035867 |
T |
|
| Q |
407 |
tacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcctccactc |
506 |
Q |
| |
|
| |||||||||| | |||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
2035868 |
tgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggtacattcattacgagtattgtgcagtctccactt |
2035967 |
T |
|
| Q |
507 |
ttattcatggt |
517 |
Q |
| |
|
| ||||||||| |
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|
| T |
2035968 |
tcattcatggt |
2035978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 301 - 519
Target Start/End: Original strand, 1990012 - 1990230
Alignment:
| Q |
301 |
tctgaacatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccg |
400 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||| |||||||||||| | |||||||||||||||||||||| | || |||| |||||||||| | |
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|
| T |
1990012 |
tctgaacatctctgtcacttgcactatctaaatttgaagtaattgcttttcctttgtagaatggacacgttaagaaaatatcatcctatttctggttctg |
1990111 |
T |
|
| Q |
401 |
agggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcct |
500 |
Q |
| |
|
|||||||||||||||||| | || | ||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||| || |
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| T |
1990112 |
agggattacttgaacttcggaagcttgctcaaaggtttgaagataagatctatactgatgcggcaagccaggtacattcattacgagtattgtgcagtct |
1990211 |
T |
|
| Q |
501 |
ccactcttattcatggtta |
519 |
Q |
| |
|
||||| | ||||||||||| |
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|
| T |
1990212 |
ccactttcattcatggtta |
1990230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 301 - 505
Target Start/End: Original strand, 2021574 - 2021778
Alignment:
| Q |
301 |
tctgaacatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccg |
400 |
Q |
| |
|
|||| |||| ||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| || | ||||||||||| ||| | |
|
|
| T |
2021574 |
tctgtacatttctgtcacttgcattatctaaatttgaaataattgatttttctctgtagaatggacacgttaagaaaacgtcttcctgtttctagttatg |
2021673 |
T |
|
| Q |
401 |
agggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcct |
500 |
Q |
| |
|
|||||||| ||||||||| | |||| ||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
2021674 |
agggattaattgaacttcagaagattgctcaaaggtttgaagataagatttacacttctgcgacaagcaaggtacattcattacgagtattgtgctgcct |
2021773 |
T |
|
| Q |
501 |
ccact |
505 |
Q |
| |
|
||||| |
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|
| T |
2021774 |
ccact |
2021778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 2021374 - 2021452
Alignment:
| Q |
138 |
ctgttgcattgtgtaacattttgaaataattggaacaaacatttttgtcacattgatgaatgatgatccttggatctgt |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
2021374 |
ctgttgcattgtgtaacattttgaaatcattggaacaaatttttttgtaacattgatgaatggttatccttggatctgt |
2021452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 1989871 - 1989915
Alignment:
| Q |
190 |
ttgatgaatgatgatccttggatctgtgatctatcctataaacag |
234 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
1989871 |
ttgatgaatgatgatccttggttctgtgatctgtcctctaaacag |
1989915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 671
Target Start/End: Original strand, 2021893 - 2021940
Alignment:
| Q |
624 |
taactaacggaatcaaatcagttagagggatttgacctctataaatac |
671 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
2021893 |
taactaactgaatcaaataagttagagggatttgacctttatagatac |
2021940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 40911156 - 40911269
Alignment:
| Q |
361 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
460 |
Q |
| |
|
|||||||| |||| ||| ||| |||||||||||||| || ||||| | |||||||| | |||| | ||| |||||||||||||||||||||| | | |
|
|
| T |
40911156 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaagtttgaagataagatttatactgctg |
40911255 |
T |
|
| Q |
461 |
cgacaagccaggta |
474 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
40911256 |
caacaagccaggta |
40911269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 44968831 - 44968718
Alignment:
| Q |
361 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
460 |
Q |
| |
|
|||||||| |||| ||| ||| |||||||||||||| || ||||| | |||||||| | |||| | ||| |||||||||| |||||||||||| | | |
|
|
| T |
44968831 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaggtttgaagagaagatttatactgctg |
44968732 |
T |
|
| Q |
461 |
cgacaagccaggta |
474 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
44968731 |
caacaagccaggta |
44968718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 44983146 - 44983033
Alignment:
| Q |
361 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
460 |
Q |
| |
|
|||||||| |||| ||| ||| |||||||||||||| || ||||| | ||||||| | |||| | ||| |||||||||| |||||||||||| | | |
|
|
| T |
44983146 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaactttggaagattgcccaaaggtttgaagagaagatttatactgctg |
44983047 |
T |
|
| Q |
461 |
cgacaagccaggta |
474 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
44983046 |
caacaagccaggta |
44983033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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