View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11079_low_2 (Length: 738)

Name: NF11079_low_2
Description: NF11079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11079_low_2
NF11079_low_2
[»] chr8 (16 HSPs)
chr8 (106-736)||(30936014-30936644)
chr8 (589-736)||(4125005-4125155)
chr8 (589-736)||(2743943-2744093)
chr8 (600-736)||(12958077-12958216)
chr8 (589-736)||(13468726-13468876)
chr8 (586-681)||(7839231-7839326)
chr8 (589-729)||(19715706-19715850)
chr8 (619-736)||(15682939-15683059)
chr8 (591-734)||(28377670-28377815)
chr8 (610-736)||(36994502-36994631)
chr8 (597-681)||(30055990-30056074)
chr8 (589-645)||(39086856-39086912)
chr8 (589-673)||(8521774-8521857)
chr8 (608-670)||(24988578-24988640)
chr8 (648-690)||(44639042-44639084)
chr8 (637-690)||(8034158-8034211)
[»] scaffold0182 (1 HSPs)
scaffold0182 (589-736)||(26341-26491)
[»] chr4 (23 HSPs)
chr4 (589-736)||(31307047-31307197)
chr4 (586-736)||(38766099-38766252)
chr4 (586-736)||(45994532-45994685)
chr4 (592-736)||(14854615-14854762)
chr4 (586-678)||(9012341-9012433)
chr4 (598-735)||(35972354-35972494)
chr4 (589-736)||(46016156-46016309)
chr4 (587-682)||(35334077-35334172)
chr4 (586-736)||(38844146-38844299)
chr4 (589-713)||(51626287-51626414)
chr4 (598-681)||(33529325-33529408)
chr4 (589-736)||(32005127-32005282)
chr4 (603-682)||(13948587-13948666)
chr4 (598-651)||(15133473-15133526)
chr4 (597-736)||(17135107-17135248)
chr4 (593-682)||(46250540-46250629)
chr4 (610-736)||(13686611-13686741)
chr4 (587-683)||(14042895-14042991)
chr4 (619-690)||(3649057-3649128)
chr4 (589-678)||(18841556-18841646)
chr4 (619-736)||(22189399-22189519)
chr4 (607-681)||(36990093-36990167)
chr4 (621-690)||(31308356-31308425)
[»] chr7 (20 HSPs)
chr7 (589-736)||(29059815-29059965)
chr7 (589-736)||(31492113-31492263)
chr7 (589-688)||(20207558-20207657)
chr7 (586-709)||(28537427-28537549)
chr7 (608-736)||(8839281-8839412)
chr7 (587-690)||(35707905-35708008)
chr7 (607-736)||(19477249-19477380)
chr7 (624-736)||(13254117-13254232)
chr7 (587-683)||(21747019-21747115)
chr7 (592-716)||(24172237-24172366)
chr7 (586-678)||(37339711-37339803)
chr7 (589-682)||(11486725-11486818)
chr7 (608-653)||(29428792-29428837)
chr7 (589-645)||(28665194-28665250)
chr7 (586-669)||(31776498-31776581)
chr7 (622-682)||(14545010-14545070)
chr7 (605-736)||(46373683-46373817)
chr7 (589-682)||(42741790-42741882)
chr7 (662-736)||(27484103-27484180)
chr7 (598-641)||(36821070-36821113)
[»] chr2 (23 HSPs)
chr2 (586-736)||(17981508-17981660)
chr2 (587-736)||(18105342-18105493)
chr2 (598-736)||(5394407-5394547)
chr2 (589-736)||(42745097-42745247)
chr2 (595-737)||(9438123-9438268)
chr2 (589-736)||(31579210-31579360)
chr2 (587-669)||(25423824-25423906)
chr2 (608-686)||(38743801-38743879)
chr2 (589-653)||(37092176-37092240)
chr2 (613-736)||(44752199-44752325)
chr2 (589-675)||(37179982-37180068)
chr2 (655-736)||(44732620-44732704)
chr2 (637-736)||(12133259-12133361)
chr2 (598-666)||(14551557-14551625)
chr2 (600-674)||(7020352-7020426)
chr2 (595-653)||(39562261-39562319)
chr2 (666-725)||(17627580-17627642)
chr2 (609-653)||(17655757-17655801)
chr2 (663-725)||(17672652-17672717)
chr2 (655-736)||(7157508-7157592)
chr2 (620-686)||(14121894-14121960)
chr2 (703-736)||(19252590-19252623)
chr2 (693-726)||(29995510-29995543)
[»] chr3 (14 HSPs)
chr3 (589-736)||(30995946-30996096)
chr3 (589-729)||(27763738-27763881)
chr3 (586-705)||(20861289-20861411)
chr3 (589-736)||(38331138-38331288)
chr3 (589-736)||(25224709-25224859)
chr3 (589-736)||(48204292-48204442)
chr3 (608-726)||(40294632-40294753)
chr3 (589-662)||(8757431-8757504)
chr3 (598-713)||(55123130-55123248)
chr3 (586-660)||(44941243-44941316)
chr3 (589-682)||(1642673-1642766)
chr3 (589-641)||(40318430-40318482)
chr3 (598-653)||(39950308-39950363)
chr3 (598-686)||(43621301-43621390)
[»] chr5 (13 HSPs)
chr5 (589-682)||(5123479-5123572)
chr5 (589-736)||(10591937-10592087)
chr5 (589-682)||(31113401-31113494)
chr5 (589-736)||(30784967-30785117)
chr5 (598-736)||(12682645-12682786)
chr5 (593-737)||(22187983-22188128)
chr5 (589-669)||(25983745-25983825)
chr5 (620-729)||(18909313-18909425)
chr5 (612-682)||(36212963-36213033)
chr5 (598-734)||(35774597-35774736)
chr5 (697-738)||(28023535-28023576)
chr5 (598-641)||(373754-373797)
chr5 (598-683)||(29553605-29553690)
[»] chr6 (9 HSPs)
chr6 (586-736)||(12411158-12411311)
chr6 (586-683)||(12836875-12836972)
chr6 (589-736)||(21910215-21910364)
chr6 (589-682)||(31412189-31412282)
chr6 (598-736)||(31107483-31107624)
chr6 (596-669)||(9536847-9536920)
chr6 (586-736)||(28099253-28099406)
chr6 (609-689)||(6062102-6062182)
chr6 (589-681)||(1534320-1534410)
[»] chr1 (20 HSPs)
chr1 (598-738)||(16756090-16756233)
chr1 (598-683)||(42297432-42297517)
chr1 (589-683)||(36806677-36806771)
chr1 (602-712)||(9780983-9781096)
chr1 (598-736)||(22022130-22022271)
chr1 (591-682)||(28724739-28724830)
chr1 (589-678)||(15642526-15642615)
chr1 (598-686)||(7242797-7242885)
chr1 (610-736)||(12035559-12035689)
chr1 (589-735)||(18428123-18428271)
chr1 (589-679)||(39547345-39547435)
chr1 (589-653)||(49071673-49071737)
chr1 (598-660)||(10750686-10750748)
chr1 (589-690)||(32534142-32534242)
chr1 (606-683)||(46864157-46864234)
chr1 (610-689)||(33721000-33721079)
chr1 (649-725)||(35692506-35692585)
chr1 (586-678)||(10367575-10367667)
chr1 (619-686)||(33059737-33059804)
chr1 (671-736)||(29124755-29124823)
[»] scaffold0009 (1 HSPs)
scaffold0009 (598-679)||(27215-27296)
[»] scaffold0013 (1 HSPs)
scaffold0013 (589-653)||(29133-29197)


Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 106 - 736
Target Start/End: Complemental strand, 30936644 - 30936014
Alignment:
Q  106 gatcaagattatgatttgttagaatgagtatagttacatgtttcgttatttgcgcatggcctcaagaataaagtttacacatgtaattctatttgtatat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30936644 gatcaagattatgatttgttagaatgagtatagttacatgtttcgttatttgcgcatggcctcaaggataaagtttacacatgtaattctatttgtatat 30936545  T
Q  206 aaagaaagagcatttatgtgctatgaaaattatatgcttctttttctcctttatcattttaatatttgcgaaaactgaccacacaatccatgaatttgac 305  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||        
T  30936544 aaagaaagagcatttatgcgctatgaaaattatatgcttctttttctcctttatcattttaatatttgccaaaactgaccatacaatccatgaatt---- 30936449  T
Q  306 aattgcattttgtgtatacacacacattactagcttctaccatgttagtgtaacaaaatacaagtattaaagattttaatagttaaatgtatttatctga 405  Q
        |||||||||| ||    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  30936448 ----gcattttgtggat----acacattactagctcctaccatgttagtgtaacaaaatacaagtattaaatattttaatagttaaatgtatttatctaa 30936357  T
Q  406 aattaaaaccgatatgtcaatacgaaacaaacgaacaccaacaaaatagaaaatcaaacaatgttgcactaatttgataaaagaaagcgtcaagctagtg 505  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30936356 aattaaaaccgatatgtgaatacgaaacaaacgaataccaacaaaatagaaaatcaaacaatgttgcactaatttgataaaagaaagcgtcaagctagtg 30936257  T
Q  506 acgtaaaagacgcgtttgttggggaggcaactcaatcttctaatccttaattctatattgatgcatattata----------nnnnnnnngtataaaccg 595  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||                  ||||||||||    
T  30936256 acgtaaaagaagcgtttgtt-gggaggcaactcaattttctgatccttaattctatattgatgcatattatattattctttttttttttggtataaaccg 30936158  T
Q  596 gatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cc 692  Q
    | || | ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||| |||   |     
T  30936157 ggtaacatccgcgcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatgct 30936058  T
Q  693 caatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
     || |||||||||||||||||||| ||||||||| || ||||||    
T  30936057 taaggctggattcgaactcaggaccttggttaagttagaagaga 30936014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 589 - 736
Target Start/End: Original strand, 4125005 - 4125155
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||  || |    
T  4125005 taaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgct 4125104  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||| ||||||||| |||||| |||||||||||| ||||||    
T  4125105 gcatgcccaaggcttgattcgaacccaggacattggttaagctagaagaga 4125155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 589 - 736
Target Start/End: Complemental strand, 2744093 - 2743943
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||  || || |||||||| ||||||||||||  || |    
T  2744093 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgct 2743994  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  2743993 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 2743943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 600 - 736
Target Start/End: Original strand, 12958077 - 12958216
Alignment:
Q  600 tcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaat 696  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||||||||||| || |||   ||||||    
T  12958077 tcctccgcgcgctactgcggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaat 12958176  T
Q  697 gctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||||||||| ||| || ||| |||||||||||| ||||||    
T  12958177 gctggattcaaacccatgaccttggttaagctagaagaga 12958216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 589 - 736
Target Start/End: Original strand, 13468726 - 13468876
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||  |||||| ||||||| ||||| | ||||||||||||| || |    
T  13468726 taaaccgggtatcctccgtgcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgct 13468825  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
     |   ||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  13468826 acatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 13468876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 586 - 681
Target Start/End: Original strand, 7839231 - 7839326
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaa 681  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||||| |||||||||||    
T  7839231 gtataacccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaa 7839326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 589 - 729
Target Start/End: Original strand, 19715706 - 19715850
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccc-tcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgt 687  Q
    |||||| | ||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||||| ||||||||  |||||||||||| ||     
T  19715706 taaaccaggtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgctgc 19715805  T
Q  688 tgc---cccaatgctggattcgaactcaggactttggttaagcta 729  Q
    |||   ||||| ||||||||||||| |||||| ||||||||||||    
T  19715806 tgcatgcccaaggctggattcgaacccaggaccttggttaagcta 19715850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 619 - 736
Target Start/End: Complemental strand, 15683059 - 15682939
Alignment:
Q  619 gagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggattcgaactcagga 715  Q
    |||| ||||||||||| |||||||||| | ||||| ||||||||||||||| ||||||||||||| || |||   ||||| |||||||||||||||||||    
T  15683059 gagattaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcagga 15682960  T
Q  716 ctttggttaagctaaaagaga 736  Q
    | ||| |||||||| ||||||    
T  15682959 ccttgattaagctagaagaga 15682939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 591 - 734
Target Start/End: Complemental strand, 28377815 - 28377670
Alignment:
Q  591 aaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc 690  Q
    |||||||||| ||||||||| |||||  |||||||||||| ||| |||||| | ||| ||||   |||||  ||||||| |||| |||||| |||| |||    
T  28377815 aaccggatatactccgcgcgtaactgatgagactaatcccgcgagcattgtcgcatc-aaatagacggcaaactctccctaagaattttaatgttgctgc 28377717  T
Q  691 ---cccaatgctggattcgaactcaggactttggttaagctaaaaga 734  Q
       || ||||||||||||||||||| ||||||| |||||||||||||    
T  28377716 atgcctaatgctggattcgaactcatgactttgattaagctaaaaga 28377670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 610 - 736
Target Start/End: Original strand, 36994502 - 36994631
Alignment:
Q  610 gcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggattcg 706  Q
    |||||||| |||||||||||||||| | |||||||| ||||||| || |||  ||||||  ||||||||||||| || |||    |||| ||||||||||    
T  36994502 gcaactgcagagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcg 36994601  T
Q  707 aactcaggactttggttaagctaaaagaga 736  Q
    ||| |||||| |||||||| ||| ||||||    
T  36994602 aacccaggaccttggttaaactagaagaga 36994631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 681
Target Start/End: Original strand, 30055990 - 30056074
Alignment:
Q  597 atatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaa 681  Q
    |||||| |||| |||||||   |||||||||||||||| |||||||| | |||||||  |||||||||||||| |||||||||||    
T  30055990 atatcccccgcacgcaactaaagagactaatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaa 30056074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 589 - 645
Target Start/End: Complemental strand, 39086912 - 39086856
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtggga 645  Q
    |||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  39086912 taaaccaggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtggga 39086856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 673
Target Start/End: Complemental strand, 8521857 - 8521774
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaag 673  Q
    |||| ||| |||| |||||||||||||| ||| ||||||||||||| ||||||||||  |||||| ||  ||| |||||||||||    
T  8521857 taaatcgggtatcttccgcgcgcaactg-ggatactaatccctcgagcattgtgggactcaaatgggcatcagactctccccaag 8521774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 670
Target Start/End: Complemental strand, 24988640 - 24988578
Alignment:
Q  608 gcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctcccc 670  Q
    |||||| ||||||||||||||||||||  |||||||||  |||||| |||||| ||| |||||    
T  24988640 gcgcaattgcggagactaatccctcgagtattgtgggactcaaatgagcggcaagctatcccc 24988578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 648 - 690
Target Start/End: Complemental strand, 44639084 - 44639042
Alignment:
Q  648 caaatgtgcggcaggctctccccaagagttttaacgttgttgc 690  Q
    |||||||||||||  ||||||| ||||||||||||||||||||    
T  44639084 caaatgtgcggcaaactctccctaagagttttaacgttgttgc 44639042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 690
Target Start/End: Original strand, 8034158 - 8034211
Alignment:
Q  637 attgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc 690  Q
    ||||||||| |||||||  | ||| |||||||| ||||||||||||||||||||    
T  8034158 attgtgggacccaaatggactgcaagctctccctaagagttttaacgttgttgc 8034211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 589 - 736
Target Start/End: Complemental strand, 26491 - 26341
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||||||  || |    
T  26491 taaaccgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 26392  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  26391 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 26341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 589 - 736
Target Start/End: Original strand, 31307047 - 31307197
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||  || |    
T  31307047 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 31307146  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  31307147 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 31307197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 586 - 736
Target Start/End: Complemental strand, 38766252 - 38766099
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgtt 685  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| ||||||| ||||||| ||||||||||||| |    
T  38766252 gtataaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgct 38766153  T
Q  686 gttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    | |||   ||||| ||||||||| ||| |||||| |||||||||||| ||||||    
T  38766152 gctgcatgcccaaggctggattcaaacccaggaccttggttaagctagaagaga 38766099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 586 - 736
Target Start/End: Complemental strand, 45994685 - 45994532
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgtt 685  Q
    |||||||| || ||||||  ||| ||||||||||||||||||| ||||| ||||||| || ||||||| ||| ||||||||||| |||||||||||||||    
T  45994685 gtataaactgggtatccttggcgtgcaactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgtt 45994586  T
Q  686 gttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    |||||   ||||| ||||||||||||  |||||| |||||||||||| ||||||    
T  45994585 gttgcatgcccaaggctggattcgaatccaggaccttggttaagctagaagaga 45994532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 592 - 736
Target Start/End: Complemental strand, 14854762 - 14854615
Alignment:
Q  592 accggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc- 690  Q
    ||||| |||||||||||||||||||| ||||||||||||||||  ||||| ||| ||||||| |||||| |||||||| ||||||||||||| || |||     
T  14854762 accgggtatcctccgcgcgcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgca 14854663  T
Q  691 --cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
      ||||| ||||||||||||| ||| || |||||||||||| ||||||    
T  14854662 tgcccaaggctggattcgaacccagaaccttggttaagctagaagaga 14854615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 586 - 678
Target Start/End: Complemental strand, 9012433 - 9012341
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttt 678  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |||||| |||||||| ||||||||    
T  9012433 gtataaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagttt 9012341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 598 - 735
Target Start/End: Complemental strand, 35972494 - 35972354
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttg---cccca 694  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||||  ||||||| || |||||||||| || ||    ||||    
T  35972494 tatcctccgcacgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgccca 35972395  T
Q  695 atgctggattcgaactcaggactttggttaagctaaaagag 735  Q
      ||||||||||||| || ||| |||||||||||| |||||    
T  35972394 tggctggattcgaacccaagaccttggttaagctagaagag 35972354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 589 - 736
Target Start/End: Complemental strand, 46016309 - 46016156
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||| ||| |||||||| ||||||||| ||||||||||| | |||| |||||||||| ||||||| ||||||||||||||| ||||||||||||  || |    
T  46016309 taaatcgggtatcctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 46016210  T
Q  689 gc---cccaatgctggattcgaactcaggac---tttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| ||||||    |||||||||||| ||||||    
T  46016209 gcatgcccaaggctggattcgaacccaggacctacttggttaagctagaagaga 46016156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 587 - 682
Target Start/End: Original strand, 35334077 - 35334172
Alignment:
Q  587 tataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||  ||||||||| ||||||| ||||| | ||||| | ||||||||||||    
T  35334077 tataaaccggatatccttcacgcgcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaac 35334172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 586 - 736
Target Start/End: Original strand, 38844146 - 38844299
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgtt 685  Q
    |||||| |||| ||||||| ||||| ||| |  |||||||||| ||||| |||||||||   |||||| ||||||| |||| || ||||||||||||| |    
T  38844146 gtataatccgggtatcctctgcgcgtaacagtagagactaatctctcgagcattgtgggggtcaaatgggcggcagactcttcctaagagttttaacgct 38844245  T
Q  686 gttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    |||||   ||||| |||||||||||||||| ||| |||||||||||| ||||||    
T  38844246 gttgcatgcccaaagctggattcgaactcatgaccttggttaagctagaagaga 38844299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 589 - 713
Target Start/End: Original strand, 51626287 - 51626414
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||| ||| ||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||  |||||| ||||||| || |||||||||  || |    
T  51626287 taaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgct 51626386  T
Q  689 gc---cccaatgctggattcgaactcag 713  Q
    ||   ||||| |||||||||||||||||    
T  51626387 gcatgcccaaggctggattcgaactcag 51626414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 598 - 681
Target Start/End: Complemental strand, 33529408 - 33529325
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaa 681  Q
    ||||||||| ||||||||||||||||||||||||| |  ||||||||| ||||||| |||||| |||||||| |||||||||||    
T  33529408 tatcctccgtgcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaagagttttaa 33529325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 589 - 736
Target Start/End: Original strand, 32005127 - 32005282
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||| ||||||||||||  || |||||||||||||| ||||| |||| || |||| ||||  ||||||| ||||||| ||||||||||||  || |    
T  32005127 taaaccgggtatcctccgcgcataattgcggagactaatctctcgagcattttgagatctaaataggcggcagactctccctaagagttttaacactgat 32005226  T
Q  689 gc--------cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||        ||||| |||| ||||||||||||||||||||||||| || ||||||    
T  32005227 gcaatgcatgcccaaagctgaattcgaactcaggactttggttaagttagaagaga 32005282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 603 - 682
Target Start/End: Original strand, 13948587 - 13948666
Alignment:
Q  603 tccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||| ||||||  ||| || ||||||| ||||||||||||    
T  13948587 tccgcgcgcaactgcagagactaatccctcgagcattgtgagattcaaatggacggtagactctccctaagagttttaac 13948666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 598 - 651
Target Start/End: Complemental strand, 15133526 - 15133473
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaa 651  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||    
T  15133526 tatcctccgcgcgcaactgcggagactaatctctcaaacattgtgggacccaaa 15133473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 736
Target Start/End: Complemental strand, 17135248 - 17135107
Alignment:
Q  597 atatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---ccc 693  Q
    |||||||||| ||||||||   ||||||||||||||||   || |||||  |||||| ||||||  ||||||| ||||||||||||| || |||   | |    
T  17135248 atatcctccgtgcgcaacttttgagactaatccctcgagtcttctgggactcaaatgcgcggcaaactctccctaagagttttaacgctgctgcatgcac 17135149  T
Q  694 aatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    || |||||||||||||| ||||||||| |||||||| ||||||    
T  17135148 aaggctggattcgaact-aggactttgattaagctagaagaga 17135107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 593 - 682
Target Start/End: Original strand, 46250540 - 46250629
Alignment:
Q  593 ccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    |||| |||||||| ||| |||| |||||||||||| | |||| ||| |||||| ||||||| |||||||||| |||  ||||||||||||    
T  46250540 ccggttatcctccacgcacaaccgcggagactaattcttcgagcatcgtgggacccaaatgggcggcaggctttccataagagttttaac 46250629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 736
Target Start/End: Complemental strand, 13686741 - 13686611
Alignment:
Q  610 gcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctcccc-aagagttttaacgttgttgc---cccaatgctggattc 705  Q
    ||||||| ||||||||||| ||||| | ||||| || |||||||  |||||  |||||||  ||||||||||||| || |||   ||||| | |||||||    
T  13686741 gcaactgtggagactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattc 13686642  T
Q  706 gaactcaggactttggttaagctaaaagaga 736  Q
    |||| |||||| |||||||||| | ||||||    
T  13686641 gaacccaggaccttggttaagcaagaagaga 13686611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 683
Target Start/End: Complemental strand, 14042991 - 14042895
Alignment:
Q  587 tataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacg 683  Q
    ||||||||||  |||||| ||||| |||  ||||||| ||||||| || |||||||| |||||||||  || || | ||||||||||||||| ||||    
T  14042991 tataaaccgggcatcctctgcgcgtaaccacggagacaaatcccttgagcattgtggaatccaaatggacgacatgttctccccaagagtttaaacg 14042895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 690
Target Start/End: Original strand, 3649057 - 3649128
Alignment:
Q  619 gagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc 690  Q
    ||||||||||| ||||   ||||| |||||||||| |||| |  ||||||| ||||||||||||||||||||    
T  3649057 gagactaatccttcgagtcttgtgcgatccaaatgagcggaaaactctccctaagagttttaacgttgttgc 3649128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 678
Target Start/End: Complemental strand, 18841646 - 18841556
Alignment:
Q  589 taaaccggatatcctccgcgcgcaact-gcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttt 678  Q
    |||||| | ||||||||| |||||||| |||||||||||||||| || | |||| ||||||||||  ||||||  |||| || ||||||||    
T  18841646 taaaccaggtatcctccgtgcgcaacttgcggagactaatcccttgagccttgtaggatccaaattggcggcaaactctacctaagagttt 18841556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 736
Target Start/End: Original strand, 22189399 - 22189519
Alignment:
Q  619 gagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggattcgaactcagga 715  Q
    ||||||||| |||||| | |||||||| ||| ||  ||||||  |||| || ||||||||||| |||| |||   | ||| | ||||||||||||| |||    
T  22189399 gagactaattcctcgagccttgtgggacccatataggcggcaatctctacctaagagttttaatgttgctgcatgcacaaggttggattcgaactctgga 22189498  T
Q  716 ctttggttaagctaaaagaga 736  Q
    | |||||||||||| ||||||    
T  22189499 ccttggttaagctagaagaga 22189519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 681
Target Start/End: Original strand, 36990093 - 36990167
Alignment:
Q  607 cgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaa 681  Q
    |||| ||||||| | |||||| |||||| ||||||||||| ||||||  |||||  || ||||||||||||||||    
T  36990093 cgcgtaactgcgaatactaattcctcgagcattgtgggattcaaatggacggcaaactttccccaagagttttaa 36990167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 690
Target Start/End: Complemental strand, 31308425 - 31308356
Alignment:
Q  621 gactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc 690  Q
    |||||||||||| |||||||||||| | ||||   |||||| |||| || ||||||||||||||| ||||    
T  31308425 gactaatccctcaaacattgtgggacctaaatagacggcagactcttcctaagagttttaacgttattgc 31308356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 589 - 736
Target Start/End: Complemental strand, 29059965 - 29059815
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| ||||||||||||||| ||||||||||||  || |    
T  29059965 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 29059866  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  29059865 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 29059815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 589 - 736
Target Start/End: Complemental strand, 31492263 - 31492113
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||| ||||||||||||  || |    
T  31492263 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgct 31492164  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  31492163 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 31492113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 589 - 688
Target Start/End: Complemental strand, 20207657 - 20207558
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||  ||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||||||  ||||||||||||||||||    
T  20207657 taaaccgagtatcctctgtgcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctccttaagagttttaacgttgtt 20207558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 586 - 709
Target Start/End: Complemental strand, 28537549 - 28537427
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgtt 685  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||| | |||    ||| ||||||| ||||||||||||||| |||||||||||||||    
T  28537549 gtataaaccgggtatccttcgcgtgcaactgcggagactaatccctcaagcat----ggacccaaatgggcggcaggctctccctaagagttttaacgtt 28537454  T
Q  686 gttgc---cccaatgctggattcgaac 709  Q
    |||||   ||||| |||||||||||||    
T  28537453 gttgcatgcccaaggctggattcgaac 28537427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 608 - 736
Target Start/End: Original strand, 8839281 - 8839412
Alignment:
Q  608 gcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggatt 704  Q
    |||||| ||||||||||||||||||||  ||||||||||| ||||  |||||||  |||||| ||||||||||||| || |||   ||||| ||||||||    
T  8839281 gcgcaattgcggagactaatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctggatt 8839380  T
Q  705 cgaactcaggactttggttaagctaaaagaga 736  Q
    ||||| |||||| |||||||||||| ||||||    
T  8839381 cgaacccaggaccttggttaagctagaagaga 8839412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 35708008 - 35707905
Alignment:
Q  587 tataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttg 686  Q
    |||||||||| |||||||| ||||||||||| |||||||||||||||| |||||| ||||| ||||| | |||| | |||||| |||| |||||||||||    
T  35708008 tataaaccgggtatcctccacgcgcaactgcagagactaatccctcgagcattgtaggatctaaatgggaggcaagttctccctaagaattttaacgttg 35707909  T
Q  687 ttgc 690  Q
    ||||    
T  35707908 ttgc 35707905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 607 - 736
Target Start/End: Original strand, 19477249 - 19477380
Alignment:
Q  607 cgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggat 703  Q
    |||||||||||||||||||||||||| | |||||||||| |||||||  ||||| |||||||| ||||||||||||  ||||||   ||||| |||||||    
T  19477249 cgcgcaactgcggagactaatccctc-agcattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggat 19477347  T
Q  704 tcgaactcaggactttggttaagctaaaagaga 736  Q
    || ||| ||| || |||||||||||| ||||||    
T  19477348 tcaaacccagaaccttggttaagctagaagaga 19477380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 624 - 736
Target Start/End: Original strand, 13254117 - 13254232
Alignment:
Q  624 taatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggattcgaactcaggactttg 720  Q
    ||||||||||| |||||||||| | ||||| ||||||||||||||| |||||||| |||| || |||   || || |||||||||||||||||||| |||    
T  13254117 taatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttg 13254216  T
Q  721 gttaagctaaaagaga 736  Q
    ||||||||| ||||||    
T  13254217 gttaagctagaagaga 13254232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 587 - 683
Target Start/End: Original strand, 21747019 - 21747115
Alignment:
Q  587 tataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacg 683  Q
    |||||||| | |||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||| | || |||||||||| |||||||||||||    
T  21747019 tataaaccaggtatcctccgcgcacaactgcgaagactaatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaacg 21747115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 716
Target Start/End: Complemental strand, 24172366 - 24172237
Alignment:
Q  592 accggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctcccca--agagttttaacgttgttg 689  Q
    ||||| ||| ||||||||||||||||  |||||||||| |||| ||||||||||||||| || |||||| |||||| | |  ||||||||||||||||||    
T  24172366 accgggtatactccgcgcgcaactgcatagactaatccttcgagcattgtgggatccaagtgggcggcaagctctcactaagagagttttaacgttgttg 24172267  T
Q  690 c---cccaatgctggattcgaactcaggac 716  Q
    |   ||||| | ||||||||||| ||||||    
T  24172266 catgcccaaggttggattcgaacccaggac 24172237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 586 - 678
Target Start/End: Original strand, 37339711 - 37339803
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttt 678  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||  ||||||| ||||| | ||||||||    
T  37339711 gtataaatcgggtatcctccgtgcgcaactgcggagactaatccctcgagcattatgggacccaaataggcggcagactctcactaagagttt 37339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 589 - 682
Target Start/End: Original strand, 11486725 - 11486818
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    |||||||| |||||||||||||||||||  |||||||||| || || |||||||| | ||||||| |||||| ||||| |  ||||||||||||    
T  11486725 taaaccgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaagctcttcttaagagttttaac 11486818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 608 - 653
Target Start/End: Original strand, 29428792 - 29428837
Alignment:
Q  608 gcgcaactgcggagactaatccctcgaacattgtgggatccaaatg 653  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  29428792 gcgcaactgcagagactaatccctcgaacattgtgggatccaaatg 29428837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 589 - 645
Target Start/End: Complemental strand, 28665250 - 28665194
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtggga 645  Q
    ||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  28665250 taaactgggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtggga 28665194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 586 - 669
Target Start/End: Complemental strand, 31776581 - 31776498
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccc 669  Q
    ||||||||| | |||||||||| |||||||||| ||| |||||||||||  ||||||||| ||||||| || || |||||||||    
T  31776581 gtataaaccaggtatcctccgcccgcaactgcgaagattaatccctcgagtattgtgggacccaaatgggcagctggctctccc 31776498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 14545070 - 14545010
Alignment:
Q  622 actaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    |||||||| |||| |||||||||| |||||||  |||||||||||||| ||||||||||||    
T  14545070 actaatccatcgagcattgtgggacccaaatggacggcaggctctccctaagagttttaac 14545010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 736
Target Start/End: Complemental strand, 46373817 - 46373683
Alignment:
Q  605 cgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttg---ccccaatgctgg 701  Q
    |||||| ||||||  ||||||||| ||||| ||||||| || ||||||  |||||| |||||||| | ||||||||||| |||||    |||||  ||||    
T  46373817 cgcgcgaaactgccaagactaatctctcgagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatgttgtatgcccaagactgg 46373718  T
Q  702 attcgaactcaggactttggttaagctaaaagaga 736  Q
    |||||||| |||||  ||| |||||||| ||||||    
T  46373717 attcgaacccaggatcttgcttaagctagaagaga 46373683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 682
Target Start/End: Original strand, 42741790 - 42741882
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    |||| ||| |||||||||||||||||||| |||| |||||||||||  ||| | ||| ||||||| | |||||| |||||| || |||||||||    
T  42741790 taaatcgggtatcctccgcgcgcaactgcagagattaatccctcgagtattat-ggacccaaatgggtggcaggttctccctaaaagttttaac 42741882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 736
Target Start/End: Original strand, 27484103 - 27484180
Alignment:
Q  662 gctctccccaagagttttaacgttgttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    |||||||||||||||||||||| || |||   ||||  ||||||||  |||||||||| |||||||||||| ||||||    
T  27484103 gctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcaggaccttggttaagctagaagaga 27484180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 641
Target Start/End: Original strand, 36821070 - 36821113
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgt 641  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||    
T  36821070 tatcctctgcgcgcaactgcagagactaatccctcgagcattgt 36821113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 586 - 736
Target Start/End: Complemental strand, 17981660 - 17981508
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgtt 685  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||| |||||||| ||||||||||| |||    
T  17981660 gtataaaccgggtatcctccgcgcgcaactgcggagactaatctctcgagcattgtgggacccaaat-tgcggcaagctctccctaagagttttaatgtt 17981562  T
Q  686 gttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    |||||   |||||  |||||||  || |||||||||||||||||||| ||||||    
T  17981561 gttgcatgcccaagactggatttaaattcaggactttggttaagctagaagaga 17981508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 587 - 736
Target Start/End: Original strand, 18105342 - 18105493
Alignment:
Q  587 tataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttg 686  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||  |||||| ||  |||||| ||||||||||||||  |||| |||||||||||    
T  18105342 tataaaccggatatcctccgcgcgcaactgcg-agactaatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttg 18105440  T
Q  687 ttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||||   ||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  18105441 ttgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 18105493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 598 - 736
Target Start/End: Complemental strand, 5394547 - 5394407
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---ccca 694  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||| ||||||||||||  || |||   ||||    
T  5394547 tatcctccgcgtgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaac-atgctgcatgccca 5394449  T
Q  695 atgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    | ||||||||||||| |||||| |||||||||||| ||||||    
T  5394448 aggctggattcgaacccaggaccttggttaagctagaagaga 5394407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 589 - 736
Target Start/End: Original strand, 42745097 - 42745247
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||| |||||||||||||||||||| |||||||||||||||| |||||||| | ||||||  || |||| ||||||| |||||||||||| ||| |    
T  42745097 taaaccgggtatcctccgcgcgcaactgctgagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacattgct 42745196  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| || ||| |||||||||||| ||||||    
T  42745197 gcatgcccaaggctggattcgaacccaagaccttggttaagctataagaga 42745247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 595 - 737
Target Start/End: Original strand, 9438123 - 9438268
Alignment:
Q  595 ggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---c 691  Q
    |||||||||||||||||||||| ||| ||||||||||| | ||||||||||  |||||| |||||||| ||| || ||||||||||||  || |||   |    
T  9438123 ggatatcctccgcgcgcaactgtggaaactaatccctcaagcattgtgggacacaaatgggcggcaggttcttcctaagagttttaaccctgctgcatgc 9438222  T
Q  692 ccaatgctggattcgaactcaggactttggttaagctaaaagagat 737  Q
    |||| |||||||||||||  | ||||||||||||||||||||||||    
T  9438223 ccaaggctggattcgaaccaaagactttggttaagctaaaagagat 9438268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 589 - 736
Target Start/End: Original strand, 31579210 - 31579360
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||||   ||||| ||||||| ||||||| || |||||||||  ||||    
T  31579210 taaaccgggtatcctccgcgcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgtt 31579309  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| || ||| ||| |||||||| ||||||    
T  31579310 gcatgcccaaggctggattcgaacccaagaccttgattaagctagaagaga 31579360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 587 - 669
Target Start/End: Complemental strand, 25423906 - 25423824
Alignment:
Q  587 tataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccc 669  Q
    |||||| ||| |||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||| |||||||| ||||||    
T  25423906 tataaatcgggtatcctccacgcgcaactgctgagactaatccctcgagcattgtgggacccaaatgggcggcaggttctccc 25423824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 608 - 686
Target Start/End: Complemental strand, 38743879 - 38743801
Alignment:
Q  608 gcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttg 686  Q
    ||||||||||||||||||||||||  | ||||||| |||||||||| |||||| ||||||||||| |||||||||||||    
T  38743879 gcgcaactgcggagactaatccctaaagcattgtgagatccaaatgagcggcaagctctccccaaaagttttaacgttg 38743801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 589 - 653
Target Start/End: Original strand, 37092176 - 37092240
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatg 653  Q
    |||||||| ||||||||| || |||||||||||||||||||||||| || ||||||| |||||||    
T  37092176 taaaccgggtatcctccgtgcacaactgcggagactaatccctcgagcactgtgggacccaaatg 37092240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 613 - 736
Target Start/End: Original strand, 44752199 - 44752325
Alignment:
Q  613 actgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggattcgaac 709  Q
    |||| |||||||||||||||||  ||||| | | ||||||  | |||| |||||||| ||||||||||||||||||||   |||||  || |||||||||    
T  44752199 actgtggagactaatccctcgagtattgtagaacccaaattggtggcaagctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaac 44752298  T
Q  710 tcaggactttggttaagctaaaagaga 736  Q
      |||| ||||||||||||| ||||||    
T  44752299 ctaggagtttggttaagctagaagaga 44752325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 589 - 675
Target Start/End: Original strand, 37179982 - 37180068
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagag 675  Q
    |||| ||| |||||||||||||||| |||| |||||||||||||||  |||||||||  |||||| ||||||  ||||||| |||||    
T  37179982 taaatcgggtatcctccgcgcgcaagtgcgtagactaatccctcgagtattgtgggactcaaatgggcggcacactctccctaagag 37180068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 736
Target Start/End: Original strand, 44732620 - 44732704
Alignment:
Q  655 gcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||||||||||||||| ||||||||||||  || |||   ||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  44732620 gcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagaga 44732704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 736
Target Start/End: Original strand, 12133259 - 12133361
Alignment:
Q  637 attgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggattcgaactcaggactttggttaagctaaaag 733  Q
    ||||| ||| |||||||  |||||||||||||| |||||||||||||||| |||    |||| ||||||||||||| || ||| ||| |||||||| |||    
T  12133259 attgtaggacccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaag 12133358  T
Q  734 aga 736  Q
    |||    
T  12133359 aga 12133361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 666
Target Start/End: Complemental strand, 14551625 - 14551557
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctct 666  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||| ||| ||||||  ||||||| ||||    
T  14551625 tatcctctgcgcgcaactgcggagattaatccctcgagcattgtaggacccaaataggcggcagactct 14551557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 674
Target Start/End: Original strand, 7020352 - 7020426
Alignment:
Q  600 tcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaaga 674  Q
    |||||||||||||||||  |||||||||| ||||| |||||| ||| ||||||| |||||| | |||||| ||||    
T  7020352 tcctccgcgcgcaactgtcgagactaatcactcgagcattgtaggacccaaatgggcggcaagttctccctaaga 7020426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 653
Target Start/End: Complemental strand, 39562319 - 39562261
Alignment:
Q  595 ggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatg 653  Q
    |||||||||||| || |||||||||||| |||||| ||||| |||||||||| ||||||    
T  39562319 ggatatcctccgagcacaactgcggagattaatccttcgaatattgtgggattcaaatg 39562261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 666 - 725
Target Start/End: Complemental strand, 17627642 - 17627580
Alignment:
Q  666 tccccaagagttttaacgttgttgc---cccaatgctggattcgaactcaggactttggttaa 725  Q
    |||| |||| |||||||||||||||   ||||| |||||||||||||||||||| ||||||||    
T  17627642 tccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggttaa 17627580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 609 - 653
Target Start/End: Complemental strand, 17655801 - 17655757
Alignment:
Q  609 cgcaactgcggagactaatccctcgaacattgtgggatccaaatg 653  Q
    |||||||||||||||||||||||||| | |||||| |||||||||    
T  17655801 cgcaactgcggagactaatccctcgagccttgtggaatccaaatg 17655757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 725
Target Start/End: Complemental strand, 17672717 - 17672652
Alignment:
Q  663 ctctccccaagagttttaacgttgttgc---cccaatgctggattcgaactcaggactttggttaa 725  Q
    ||||||| |||| |||||||||||||||   ||||| | |||||||||||||||||| ||||||||    
T  17672717 ctctccctaagaattttaacgttgttgcatgcccaaggttggattcgaactcaggaccttggttaa 17672652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 736
Target Start/End: Complemental strand, 7157592 - 7157508
Alignment:
Q  655 gcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||||||||||||||| |||||||||||||||| |||   ||||| ||| |||||||||  ||||  ||||||||| || ||||||    
T  7157592 gcggcaggctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagaga 7157508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 620 - 686
Target Start/End: Original strand, 14121894 - 14121960
Alignment:
Q  620 agactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttg 686  Q
    ||||||||||||||| ||||||||||  |||||| |||||| | |||| | |||| |||||||||||    
T  14121894 agactaatccctcgagcattgtgggactcaaatgggcggcaagttctctctaagaattttaacgttg 14121960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 703 - 736
Target Start/End: Original strand, 19252590 - 19252623
Alignment:
Q  703 ttcgaactcaggactttggttaagctaaaagaga 736  Q
    ||||||||||||| ||||||||||||||||||||    
T  19252590 ttcgaactcaggagtttggttaagctaaaagaga 19252623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 726
Target Start/End: Original strand, 29995510 - 29995543
Alignment:
Q  693 caatgctggattcgaactcaggactttggttaag 726  Q
    |||||||||||||||||||||||||||| |||||    
T  29995510 caatgctggattcgaactcaggactttgcttaag 29995543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 589 - 736
Target Start/End: Original strand, 30995946 - 30996096
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||| ||||||| ||||||||||||| ||||    
T  30995946 taaaccagatatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgtt 30996045  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| |  |||||||||| |||||| ||||||||| || ||||||    
T  30996046 gcatgcccaaggtcggattcgaacccaggaccttggttaagatagaagaga 30996096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 589 - 729
Target Start/End: Complemental strand, 27763881 - 27763738
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac---gtt 685  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||  |||||| ||||||| ||||||||||||   |||    
T  27763881 taaaccggatatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgtt 27763782  T
Q  686 gttgccccaatgctggattcgaactcaggactttggttaagcta 729  Q
    ||   ||||| ||||||||||||| |||||| ||||||||||||    
T  27763781 gtatgcccaaggctggattcgaacccaggaccttggttaagcta 27763738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 586 - 705
Target Start/End: Complemental strand, 20861411 - 20861289
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgtt 685  Q
    |||||||| || |||||||||||| |||||||||||||||||||||||| |||| ||| | ||||||| ||||||||||||||| ||||||||||||| |    
T  20861411 gtataaactgggtatcctccgcgcacaactgcggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaacgct 20861312  T
Q  686 gttgc---cccaatgctggattc 705  Q
    | |||   |||||||||||||||    
T  20861311 gctgcatgcccaatgctggattc 20861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 589 - 736
Target Start/End: Complemental strand, 38331288 - 38331138
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||| | ||||||||||||| || |    
T  38331288 taaatcgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctgct 38331189  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   | ||| | ||||||| |||||||||| ||||||||| || ||||||    
T  38331188 gcatgctcaaagttggattcaaactcaggacattggttaagttagaagaga 38331138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 589 - 736
Target Start/End: Complemental strand, 25224859 - 25224709
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||||| ||||||||||| |||||||||||||||||||||| || |||||||||| | ||||| |||||| | |||||  ||||||||||||| || |    
T  25224859 taaaccgggtatcctccgcgtgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaacgctgct 25224760  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   |||||  || ||||||||| |||||| |||||||||||| ||||||    
T  25224759 gcattcccaaaacttgattcgaacccaggaccttggttaagctagaagaga 25224709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 589 - 736
Target Start/End: Original strand, 48204292 - 48204442
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||| ||| ||||||||||||||||||||||| |||||||||| || |||||||| | |||||||  || || |||||||| ||| |||||||||||| |    
T  48204292 taaatcgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgct 48204391  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| || ||| |||||||||||| ||||||    
T  48204392 gcatgcccaaggctggattcgaacccaagaccttggttaagctagaagaga 48204442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 608 - 726
Target Start/End: Complemental strand, 40294753 - 40294632
Alignment:
Q  608 gcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggatt 704  Q
    |||||||||||||||||||||| ||||  |||||||||| |||||| |||||| ||| |||| |||||||||||| |||||||    |||| ||||||||    
T  40294753 gcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttgcatatccaaggctggatt 40294654  T
Q  705 cgaactcaggactttggttaag 726  Q
    |||||||||||| ||| |||||    
T  40294653 cgaactcaggaccttgattaag 40294632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 589 - 662
Target Start/End: Complemental strand, 8757504 - 8757431
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcagg 662  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||||||    
T  8757504 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaataggcggcagg 8757431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 598 - 713
Target Start/End: Complemental strand, 55123248 - 55123130
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---ccca 694  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||| |  ||| |||||||| |||| |||||||| || |||    |||    
T  55123248 tatcctccgcgcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctgctgcatttcca 55123149  T
Q  695 atgctggattcgaactcag 713  Q
    | |||||||||||||||||    
T  55123148 aggctggattcgaactcag 55123130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 586 - 660
Target Start/End: Original strand, 44941243 - 44941316
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggca 660  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||| |||  ||||||||||||| ||||||    
T  44941243 gtataaactggatatcctccgcgcgcaactgcggagactaat-cctcgagcataatgggatccaaatgggcggca 44941316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 589 - 682
Target Start/End: Complemental strand, 1642766 - 1642673
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |  ||||||||| |||||||  ||| || ||||||| || |||||||||    
T  1642766 taaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaac 1642673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 589 - 641
Target Start/End: Original strand, 40318430 - 40318482
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgt 641  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40318430 taaaacgggtatcctccgcgcgcaactgcggagactaatccctcgaacattgt 40318482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 598 - 653
Target Start/End: Complemental strand, 39950363 - 39950308
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatg 653  Q
    ||||||||||  |||||||||||||||||||| |||| |||||| |||||||||||    
T  39950363 tatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatg 39950308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 686
Target Start/End: Original strand, 43621301 - 43621390
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaaca-ttgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttg 686  Q
    ||||||| |||||||||| | |||||||||||||||| || ||||| ||   ||||| | |||| |||||||| || |||||||||||||    
T  43621301 tatcctctgcgcgcaactacagagactaatccctcgagcatttgtgagacttaaatgggaggcaagctctccctaaaagttttaacgttg 43621390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 589 - 682
Target Start/End: Original strand, 5123479 - 5123572
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  5123479 taaacagggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaac 5123572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 589 - 736
Target Start/End: Complemental strand, 10592087 - 10591937
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||  |||||| ||||||| ||||||| ||||||||||||  || |    
T  10592087 taaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgct 10591988  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| |||||| |||||||| ||| ||||||    
T  10591987 gcatgcccaaggctggattcgaacccaggaccttggttaatctagaagaga 10591937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 589 - 682
Target Start/End: Complemental strand, 31113494 - 31113401
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||||  ||||||||||||||||| |||| |||||||||| ||||||||||||    
T  31113494 taaatcgggtatccttcgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaac 31113401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 589 - 736
Target Start/End: Original strand, 30784967 - 30785117
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||| | |||||||||||||||||||||||||||||||||| |||||||||| || | |||||   |||||  |||||| |||||||||||||||| |    
T  30784967 taaaccaggtatcctccgcgcgcaactgcggagactaatcccttgaacattgtgagacctaaatggatggcagattctccctaagagttttaacgttgct 30785066  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||    |||| ||||||||||||| || ||| ||| |||||||| ||||||    
T  30785067 gcatgtccaaagctggattcgaacccaagacattgattaagctagaagaga 30785117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 598 - 736
Target Start/End: Complemental strand, 12682786 - 12682645
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---ccca 694  Q
    ||||||||||||||||||||| |||||||| ||||||| || ||||||| ||| ||  || || | |||||| ||||||||||||||||||||   | ||    
T  12682786 tatcctccgcgcgcaactgcgaagactaattcctcgaatatggtgggattcaattgaacgacaagttctcccgaagagttttaacgttgttgcatgctca 12682687  T
Q  695 atgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    | ||||||||||||||||| || ||| |||||||| ||||||    
T  12682686 aggctggattcgaactcagaacattgcttaagctagaagaga 12682645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 593 - 737
Target Start/End: Original strand, 22187983 - 22188128
Alignment:
Q  593 ccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttg--- 689  Q
    |||| ||||||||||||||||||||||||||||||||||| |  ||||||||| ||||||  ||||||| ||||  ||||||||||||||| |||||       
T  22187983 ccgggtatcctccgcgcgcaactgcggagactaatccctctagtattgtgggacccaaataggcggcagactct--ccaagagttttaacgctgttgtat 22188080  T
Q  690 ccccaatgctggattcgaactcaggactttggttaagctaaaagagat 737  Q
     ||||| ||||||||| ||| ||  || ||||||||| || |||||||    
T  22188081 gcccaaggctggattcaaacccaataccttggttaagttagaagagat 22188128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 589 - 669
Target Start/End: Complemental strand, 25983825 - 25983745
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccc 669  Q
    |||||||| ||||||||| | ||||||||||||||||||| |||||||||| |||||  |||||| |||||| ||||||||    
T  25983825 taaaccgggtatcctccgtgtgcaactgcggagactaatcactcgaacattatgggactcaaatgggcggcaagctctccc 25983745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 729
Target Start/End: Original strand, 18909313 - 18909425
Alignment:
Q  620 agactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggattcgaactcaggac 716  Q
    ||||||||||||||| ||||||||||| |||||| ||||||   |||||| ||||||||||||  || |||   ||||| |||||||||||||  |||||    
T  18909313 agactaatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggac 18909412  T
Q  717 tttggttaagcta 729  Q
     ||| ||||||||    
T  18909413 cttgattaagcta 18909425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 612 - 682
Target Start/End: Complemental strand, 36213033 - 36212963
Alignment:
Q  612 aactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    |||||||||||| |||||||||| |||||||||| | ||||| ||||||  ||||||| ||||||||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaac 36212963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 598 - 734
Target Start/End: Complemental strand, 35774736 - 35774597
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---ccca 694  Q
    |||| |||||| ||||||| ||||| |||| | ||||  |||||| ||  ||||||||||||| |||||||| ||| |||||||| |||||||    |||    
T  35774736 tatcttccgcgtgcaactgaggagattaattcatcgagtattgtgagactcaaatgtgcggcaagctctccctaagtgttttaacattgttgcatgtcca 35774637  T
Q  695 atgctggattcgaactcaggactttggttaagctaaaaga 734  Q
    | |||  ||||||||||| |||||| |||||||| |||||    
T  35774636 aggctaaattcgaactcaagactttagttaagctgaaaga 35774597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 738
Target Start/End: Original strand, 28023535 - 28023576
Alignment:
Q  697 gctggattcgaactcaggactttggttaagctaaaagagatc 738  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  28023535 gctggattcgaactcaggacattggttaagctagaagagatc 28023576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 641
Target Start/End: Original strand, 373754 - 373797
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgt 641  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||    
T  373754 tatcctccgtgcgcaactgcggagattaatcccttgaacattgt 373797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 683
Target Start/End: Complemental strand, 29553690 - 29553605
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacg 683  Q
    |||||||| ||| ||||||| |||||||||| || || |||| ||||| |||||||  || ||  ||||||| |||||||||||||    
T  29553690 tatcctccacgcacaactgcagagactaatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaacg 29553605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 6e-30; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 586 - 736
Target Start/End: Complemental strand, 12411311 - 12411158
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgtt 685  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||   ||||| ||||||| |||| || ||||||||||||| |    
T  12411311 gtataaaccgggtatcccccgcgcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgct 12411212  T
Q  686 gttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    | |||   ||||| |||||||||||||||||||| ||||||||| || ||||||    
T  12411211 gctgcatgcccaaggctggattcgaactcaggaccttggttaagttagaagaga 12411158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 586 - 683
Target Start/End: Original strand, 12836875 - 12836972
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacg 683  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||| ||||||| |||||  |||||||| |||||||||||||    
T  12836875 gtataaaccgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacg 12836972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 589 - 736
Target Start/End: Complemental strand, 21910364 - 21910215
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||| | ||||||||||| |||||||||||||||||||||| ||  ||||||||| | ||||| ||||||| ||||| | ||||||||||||| ||||    
T  21910364 taaaccaggtatcctccgcgtgcaactgcggagactaatccct-gagtattgtgggacctaaatgagcggcagactctctctaagagttttaacgatgtt 21910266  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||   ||||| ||||||||||||| |||||  |||||||||||| ||||||    
T  21910265 gcatgcccaaggctggattcgaacccaggatcttggttaagctagaagaga 21910215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 589 - 682
Target Start/End: Complemental strand, 31412282 - 31412189
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    |||| ||||||||||||| ||||||||| ||||||||||  ||||| |||||||| | ||||||| ||||||| ||||||| ||||||||||||    
T  31412282 taaatcggatatcctccgtgcgcaactgtggagactaatttctcgagcattgtggaacccaaatgggcggcagactctccctaagagttttaac 31412189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 598 - 736
Target Start/End: Original strand, 31107483 - 31107624
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---ccca 694  Q
    ||||||| |||||||| | | |||||||||| |||||| |||||||||  ||||||  ||| | |||||||| ||||||||||||| ||||||    |||    
T  31107483 tatcctctgcgcgcaattacagagactaatctctcgaatattgtgggaatcaaatggacggtaagctctcccaaagagttttaacgctgttgcatgtcca 31107582  T
Q  695 atgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||||||||||||||||||| || || |||||| || ||||||    
T  31107583 atgctggattcgaactcagaaccttagttaagttagaagaga 31107624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 596 - 669
Target Start/End: Complemental strand, 9536920 - 9536847
Alignment:
Q  596 gatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccc 669  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||| ||| |||||  ||| ||||||||||    
T  9536920 gatatcctccgagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccc 9536847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 586 - 736
Target Start/End: Complemental strand, 28099406 - 28099253
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgtt 685  Q
    |||||||| || |||||||||| |||||||||||||||||||||||||| |||| ||| |  ||||||  || ||   |||||| || |||||||||  |    
T  28099406 gtataaactgggtatcctccgctcgcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacact 28099307  T
Q  686 gttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    | |||   ||||| ||||||||||||| |||||| || |||||| || ||||||    
T  28099306 gctgcatgcccaaggctggattcgaacccaggaccttagttaaggtagaagaga 28099253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 609 - 689
Target Start/End: Complemental strand, 6062182 - 6062102
Alignment:
Q  609 cgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttg 689  Q
    |||||||||| |||||||||| |||||| |||| ||| |||||||  ||||| ||||| || ||||||||||| |||||||    
T  6062182 cgcaactgcgaagactaatccatcgaacgttgtaggacccaaatgaacggcaagctcttcctaagagttttaatgttgttg 6062102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 681
Target Start/End: Complemental strand, 1534410 - 1534320
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaa 681  Q
    |||| ||||||||||||||||  |||||||||||  ||| |||||| ||||||| ||  |||||| ||| || |||||||| |||||||||||    
T  1534410 taaatcggatatcctccgcgc--aactgcggagatcaattcctcgagcattgtgcgactcaaatgggcgacaagctctccctaagagttttaa 1534320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 598 - 738
Target Start/End: Complemental strand, 16756233 - 16756090
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---ccca 694  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||  || || |||||||| ||||||||||||| |  |||   ||||    
T  16756233 tatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctgcatgccca 16756134  T
Q  695 atgctggattcgaactcaggactttggttaagctaaaagagatc 738  Q
    |||||| |||| ||| ||| || |||||||||||| ||||||||    
T  16756133 atgctgaattcaaacccagaaccttggttaagctagaagagatc 16756090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 598 - 683
Target Start/End: Original strand, 42297432 - 42297517
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacg 683  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || |||||||  |||||| ||||||| |||||||||||||    
T  42297432 tatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaacg 42297517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 589 - 683
Target Start/End: Complemental strand, 36806771 - 36806677
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacg 683  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||| |||||||| | ||||||| ||||||| | ||||| |||||||||||||    
T  36806771 taaaccgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacg 36806677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 602 - 712
Target Start/End: Original strand, 9780983 - 9781096
Alignment:
Q  602 ctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgc 698  Q
    |||||||| ||||| |||| ||||||||||||| |||||||||| ||||||| ||||| | ||||||| ||||||||||||| || |||   ||||| ||    
T  9780983 ctccgcgcccaactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgcccaaggc 9781082  T
Q  699 tggattcgaactca 712  Q
    ||||||||||||||    
T  9781083 tggattcgaactca 9781096  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 598 - 736
Target Start/End: Complemental strand, 22022271 - 22022130
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttgc---ccca 694  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||| ||||||| | |||| | |||||| ||||||||||| | || |||   ||||    
T  22022271 tatcctccacgtgcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgccca 22022172  T
Q  695 atgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    | ||||||||||||| ||  || || ||||||||| ||||||    
T  22022171 aggctggattcgaacccacaaccttagttaagctagaagaga 22022130  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 591 - 682
Target Start/End: Complemental strand, 28724830 - 28724739
Alignment:
Q  591 aaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaac 682  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||  |||||| |||| || ||||||||||||    
T  28724830 aaccgggtatcctccgcgcgcaattgcggagactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaac 28724739  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 589 - 678
Target Start/End: Complemental strand, 15642615 - 15642526
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttt 678  Q
    |||| ||| ||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||| ||||||  ||||||| ||||||||    
T  15642615 taaatcgggtatcctccgcgcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 598 - 686
Target Start/End: Original strand, 7242797 - 7242885
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttg 686  Q
    |||| ||||||||||||||||||||||||||||||||  ||| || ||| |||||| | || || ||||||| ||||||||||||||||    
T  7242797 tatcttccgcgcgcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttg 7242885  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 610 - 736
Target Start/End: Complemental strand, 12035689 - 12035559
Alignment:
Q  610 gcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagtttt-aacgttgttgc---cccaatgctggattc 705  Q
    |||| ||| |||||||||||||||| |||||||||| ||||||| ||||||| ||||||| ||||||||| |||  ||||||   || || |||||||||    
T  12035689 gcaattgctgagactaatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgttgcatgccaaaggctggattc 12035590  T
Q  706 gaactcaggactttggttaagctaaaagaga 736  Q
    ||||  | |||||||||||| ||| ||||||    
T  12035589 gaaccaaagactttggttaaactagaagaga 12035559  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 589 - 735
Target Start/End: Original strand, 18428123 - 18428271
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||  |||||||  | |||| ||||||| || |||||||||  || |    
T  18428123 taaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggg-gccaaatggacagcagactctccctaaaagttttaacactgct 18428221  T
Q  689 gc---cccaatgctggattcgaactcaggactttggttaagctaaaagag 735  Q
    ||   ||||| | ||||||||||  ||| || |||||||||||| |||||    
T  18428222 gcatgcccaaggttggattcgaatccagaaccttggttaagctacaagag 18428271  T

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Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 589 - 679
Target Start/End: Original strand, 39547345 - 39547435
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagtttt 679  Q
    ||||||||| |||||| ||||||||||||||||| |||||| |||||||||||| || | ||||  ||||||| ||| ||| |||||||||    
T  39547345 taaaccggaaatcctctgcgcgcaactgcggagattaatccgtcgaacattgtgagacctaaataggcggcagactccccctaagagtttt 39547435  T

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Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 589 - 653
Target Start/End: Complemental strand, 49071737 - 49071673
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatg 653  Q
    |||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||||| |||||||    
T  49071737 taaatcggatatcttccgcacgcaactgcggagactaatctctcgagcattgtgggacccaaatg 49071673  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 598 - 660
Target Start/End: Complemental strand, 10750748 - 10750686
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggca 660  Q
    ||||||| |||||||||||   ||||||||||||||||||||||| |||||||||| ||||||    
T  10750748 tatcctctgcgcgcaactgtaaagactaatccctcgaacattgtgcgatccaaatgggcggca 10750686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 690
Target Start/End: Complemental strand, 32534242 - 32534142
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgtt 688  Q
    |||||| | ||||||| |||||||| |||||||||||| | ||||| ||||||| || || |||| |||| | |||||| | ||||||||||||||||||    
T  32534242 taaaccaggtatcctctgcgcgcaattgcggagactaacctctcgagcattgtgaga-cctaatgggcggtaagctctctctaagagttttaacgttgtt 32534144  T
Q  689 gc 690  Q
    ||    
T  32534143 gc 32534142  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 606 - 683
Target Start/End: Complemental strand, 46864234 - 46864157
Alignment:
Q  606 gcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacg 683  Q
    |||||||||||| ||||||||||||||||||||||||  | |||||||  ||||| | |||||| |||| ||||||||    
T  46864234 gcgcgcaactgcagagactaatccctcgaacattgtgaaacccaaatggacggcaagttctccctaagaattttaacg 46864157  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 689
Target Start/End: Complemental strand, 33721079 - 33721000
Alignment:
Q  610 gcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttgttg 689  Q
    |||| |||| ||||||||| ||||||| ||||||||||||||||  |||||  ||||||| ||||| ||||||| |||||    
T  33721079 gcaattgcgaagactaatctctcgaaccttgtgggatccaaatggacggcaaactctccctaagagatttaacgatgttg 33721000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 725
Target Start/End: Complemental strand, 35692585 - 35692506
Alignment:
Q  649 aaatgtgcggcaggctctccccaagagttttaacgttgttgc---cccaatgctggattcgaactcaggactttggttaa 725  Q
    ||||| ||||||  ||||||| |||||||||||||| |||||   ||||||| |||||||||||||| ||| ||||||||    
T  35692585 aaatgagcggcaaactctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaactcaagacattggttaa 35692506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 678
Target Start/End: Complemental strand, 10367667 - 10367575
Alignment:
Q  586 gtataaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttt 678  Q
    ||||||| ||| ||| || ||| |||||||||||||| |||||| |||| |||||| ||| ||||||| |||| || ||||||  ||||||||    
T  10367667 gtataaatcgggtattcttcgcacgcaactgcggagattaatccttcgagcattgttggacccaaatgggcggtagactctccttaagagttt 10367575  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 686
Target Start/End: Original strand, 33059737 - 33059804
Alignment:
Q  619 gagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagttttaacgttg 686  Q
    ||||||||| |||| ||| |||||||| ||||||| ||||||  ||||||  ||||||||||||||||    
T  33059737 gagactaattcctcaaaccttgtgggacccaaatgggcggcaaactctccttaagagttttaacgttg 33059804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 671 - 736
Target Start/End: Complemental strand, 29124823 - 29124755
Alignment:
Q  671 aagagttttaacgttgttgc---cccaatgctggattcgaactcaggactttggttaagctaaaagaga 736  Q
    ||||||||||||| || |||   |||||||||||||||||||||| |||  ||||||||||| ||||||    
T  29124823 aagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagaga 29124755  T

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Target: scaffold0009 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 598 - 679
Target Start/End: Original strand, 27215 - 27296
Alignment:
Q  598 tatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatgtgcggcaggctctccccaagagtttt 679  Q
    ||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||||| |||||| |||||||| |||||||||    
T  27215 tatcctccgcgcgcaactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaagctctccctaagagtttt 27296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 589 - 653
Target Start/End: Original strand, 29133 - 29197
Alignment:
Q  589 taaaccggatatcctccgcgcgcaactgcggagactaatccctcgaacattgtgggatccaaatg 653  Q
    |||| ||| ||||||||||||||||||| ||||||||||||| ||| |||||||||| |||||||    
T  29133 taaatcgggtatcctccgcgcgcaactgtggagactaatcccacgagcattgtgggacccaaatg 29197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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