View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11079_low_4 (Length: 250)
Name: NF11079_low_4
Description: NF11079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11079_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42536301 - 42536539
Alignment:
| Q |
1 |
aaattctgaggtgattatgtgggatattgtgacagaagttcaaatatttgttcagaaattggagggtatgttactcaattatcatgcaaaatataacata |
100 |
Q |
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| T |
42536301 |
aaattctgaggtgattatgtgggatattgtgacagaagttcaaatatttgttcagaaattggagggtatgttactcaattatcatgcaaaatataacata |
42536400 |
T |
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| Q |
101 |
caactcaaatctgcaagagttttatttttatcctaaaataaaataaccataaagaatatgagttgataacaaaacagcaagtaacaacaaattcacactt |
200 |
Q |
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| T |
42536401 |
caactcaaatctgcaagagttttatttttatcctaaaataaaataaccataaagaatatgagttgataacaaaacagaaagtaacaacaaattcacactt |
42536500 |
T |
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| Q |
201 |
caatagttttttgatttagagcaatgtatctccatctct |
239 |
Q |
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| T |
42536501 |
caatagttttttgatttagagcaatgtatctccatctct |
42536539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42530644 - 42530894
Alignment:
| Q |
1 |
aaattctgaggtgattatgtgggatattgtgacagaag-ttcaaatatttgttcagaaattggagggtatgttactcaatt-atcatgcaaaatataaca |
98 |
Q |
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||||||||||| | | || |||||||| |||||||||| |||||| ||||||||||||||||||| ||| ||||||||||| || ||||||||||||| | |
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| T |
42530644 |
aaattctgaggggttaatatgggatatggtgacagaaggttcaaacatttgttcagaaattggagagtaagttactcaatttattatgcaaaatataata |
42530743 |
T |
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| Q |
99 |
tacaactcaaatctgcaagagttttatttttatcctaaaataaaataaccataaagaatatgagttgataacaaaac--------------agcaagtaa |
184 |
Q |
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|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||| ||||||||| |
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| T |
42530744 |
tataactcaaatctgcaagagttttaattttattctaaaataaaataaccataaagaatgtcagttgataacaaaacagagaagggaaaatagcaagtaa |
42530843 |
T |
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| Q |
185 |
caacaaattcacacttcaatagttttttgatttagagcaatgtatctccat |
235 |
Q |
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| T |
42530844 |
caacaaattcacacttcaatagttttttgatttagagcaatgtatctccat |
42530894 |
T |
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