View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_high_100 (Length: 243)

Name: NF1107_high_100
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_high_100
NF1107_high_100
[»] chr2 (3 HSPs)
chr2 (28-241)||(33679023-33679239)
chr2 (28-241)||(33686472-33686701)
chr2 (28-241)||(33703526-33703755)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 33679023 - 33679239
Alignment:
Q  28 gaatttcaatatttt-tccaacctttcaaactattcaacttgatcgccaaggtaaaactagattgaatatcccactaattaaaaattcaaataaggaaag 126  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33679023 gaatttcaatattttttccaacctttcaaactattcaacttgatcgccaaggtaaaactagattgaatatcccactaattaaaaattcaaataaggaaag 33679122  T
Q  127 agaattttcattcttttataaatacctaagtatagtagtaaatgcaaagataggtccaaccctaaactctaaa--ctctctatcaatctattatcaatcc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  33679123 agaattttcattcttttataaatacctaagtatagtagtaaatgcaaagataggtccaaccctaaactctaaactctctctatcaatctataatcaatcc 33679222  T
Q  225 tacagttagatattcat 241  Q
    |||||||||||||||||    
T  33679223 tacagttagatattcat 33679239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 33686472 - 33686701
Alignment:
Q  28 gaatttcaatattttt-ccaacctttcaaactattcaa-----cttgatcgccaaggtaaaactagattgaatatcccactaattaaaaattcaaataag 121  Q
    |||||||||||||||| ||||||||||| || ||||||     ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||    
T  33686472 gaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatactagattgaatatcccactagttaaaaattcaaaaaag 33686571  T
Q  122 gaaagagaattttcattcttttataaatacctaa-gta---------tagtagtaaatgcaaagatag--gtccaaccctaaactctaaactctctatca 209  Q
    |||||||||||||||||||||||||||||||||| | |         |||||||||||||||||||||  |||||||||||||||||||||||||   ||    
T  33686572 gaaagagaattttcattcttttataaatacctaacgcaccccataagtagtagtaaatgcaaagataggtgtccaaccctaaactctaaactctc--cca 33686669  T
Q  210 atctattatcaatcctacagttagatattcat 241  Q
    || ||||||||||| |||| ||||||||||||    
T  33686670 atttattatcaatcatacatttagatattcat 33686701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 33703526 - 33703755
Alignment:
Q  28 gaatttcaatattttt-ccaacctttcaaactattcaa-----cttgatcgccaaggtaaaactagattgaatatcccactaattaaaaattcaaataag 121  Q
    |||||||||||||||| ||||||||||| || ||||||     ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||    
T  33703526 gaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatactagattgaatatcccactagttaaaaattcaaaaaag 33703625  T
Q  122 gaaagagaattttcattcttttataaatacctaa-gta---------tagtagtaaatgcaaagatag--gtccaaccctaaactctaaactctctatca 209  Q
    |||||||||||||||||||||||||||||||||| | |         |||||||||||||||||||||  |||||||||||||||||||||||||   ||    
T  33703626 gaaagagaattttcattcttttataaatacctaacgcaccccataagtagtagtaaatgcaaagataggtgtccaaccctaaactctaaactctc--cca 33703723  T
Q  210 atctattatcaatcctacagttagatattcat 241  Q
    || ||||||||||| |||| ||||||||||||    
T  33703724 atttattatcaatcatacatttagatattcat 33703755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University