View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1107_high_2 (Length: 936)
Name: NF1107_high_2
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 216 - 839
Target Start/End: Complemental strand, 48714901 - 48714274
Alignment:
| Q |
216 |
ttataaataaatgtagaaggcacaataacattaaacaaggcgtttagcatcttaatcataatttaagatcagagttatcaaaaactgaatttcaatacag |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48714901 |
ttataaataaatgtggaaggcacaataacattaaacaaggcgtttagcatcttaatcataatttaagatcagagttatcaaaaattgaatttcaatacag |
48714802 |
T |
|
| Q |
316 |
ttttttcttatttnnnnnnnnnnn----tcattataaaagtactaactagctgatggtctttcacccaaacatctataggtctgtcaacattctgagggt |
411 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
48714801 |
ttttttcttatttaaaaaaaaaaaaaaatcattataaaagtactaactggcagatggtctttcacccaaacatctataggtctgtcaacattccgaggat |
48714702 |
T |
|
| Q |
412 |
catagggatctccgttgaagaagtcgggaaccaccacataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacaaaatgt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48714701 |
catagggatctccgttgaagaagtcgggaaccaccacataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacgaaatgt |
48714602 |
T |
|
| Q |
512 |
aaaccataaggaatgaaacaaccgattcttttacaagtgaaaaaaggtagacaggccaaaaagtcaaaatctatttacttcaaatttaattttgacgaag |
611 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48714601 |
aaaccagaaggaatgaaacaaccgattcttttacaagtgaaaaaaggtagacaggccaaaaagtcaaaatctatttacttcaaatttaattttgacgaag |
48714502 |
T |
|
| Q |
612 |
ttcattatttacttttgcttatattcaagactagagggagcgcttaatatcagcatttcatattgaaaaacgtgagaatttgtaatcatcatcatacctt |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
48714501 |
ttcattatttacttttgcttatattcaagaccaaaggaagcgcttagtatcaacatttcatattgaaaaacgtgagaattgataattatcatcatacctt |
48714402 |
T |
|
| Q |
712 |
aaaattggggctttatatcctacaaaacaaattaagcatgtgaagacaaaaactgttaaacatgtgtagatgcattcaatatatgaaaccatgacctcct |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48714401 |
aaaattggggctttatatcctacaaaacaaattaagcatgtgaagacaaaaactgttaaacatgtgtagatgcattcaatatatgaaaccatgacctcct |
48714302 |
T |
|
| Q |
812 |
caaaataatcagtcatagataagaagga |
839 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
48714301 |
caaaataatcagccatagataagaagga |
48714274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 48715030 - 48714908
Alignment:
| Q |
8 |
ccaacaaaatccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48715030 |
ccaacaaaatccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataat |
48714931 |
T |
|
| Q |
108 |
acatgcaagtaccagaaaattat |
130 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48714930 |
acatgcaagtaccagaaaattat |
48714908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 348 - 561
Target Start/End: Complemental strand, 47167993 - 47167782
Alignment:
| Q |
348 |
aaagtactaactagctgatggtctttcacccaaacatctataggtctgtcaacattctgagggtcatagggatctccgttgaagaagtcgggaaccacca |
447 |
Q |
| |
|
|||||||||||| | ||||||||||| || |||| |||||||||||||||||||| ||| ||||||||||| || |||||||| || ||||| |||| |
|
|
| T |
47167993 |
aaagtactaactggttgatggtctttactccgaacaagtataggtctgtcaacattctcaggatcatagggatcgccattgaagaaatcaggaacaacca |
47167894 |
T |
|
| Q |
448 |
cataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacaaaatgtaaaccataaggaatgaaacaaccgattcttttacaa |
547 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| | ||||| ||||| || |||||||| || |
|
|
| T |
47167893 |
cataatacccagttgctgcaaccttgtctgcaaacatccttcac-aaacagatcaacaaaatgtaaacca-agggaataaaacagccaattcttttgtaa |
47167796 |
T |
|
| Q |
548 |
gtgaaaaaaggtag |
561 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
47167795 |
gcgaaaaaaggtag |
47167782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 622 - 756
Target Start/End: Complemental strand, 47165824 - 47165691
Alignment:
| Q |
622 |
acttttgcttatattcaagactagagggagcgcttaatatcagcatttcatattgaaaaacgtgagaatttgtaatcatcatcataccttaaaattgggg |
721 |
Q |
| |
|
||||||| | ||||| ||||| |||| ||||| ||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47165824 |
acttttgttcatatttaagaccagagagagcgtttagtatcaacatttcatattgaaaa-cgtgagaattggtaatcatcatcataccttaaaattgggg |
47165726 |
T |
|
| Q |
722 |
ctttatatcctacaaaacaaattaagcatgtgaag |
756 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
47165725 |
ctttatatcctacaaaacaaattaagcaagtgaag |
47165691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 48702607 - 48702507
Alignment:
| Q |
8 |
ccaacaaaatccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataat |
107 |
Q |
| |
|
||||||| | |||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||| ||| ||||||||||| | |||| ||||| |||| |
|
|
| T |
48702607 |
ccaacaataaccagcagctccaatagcagaaacacctttactttttaaggcttcaattattggttgggaagcttcaaaacctttgtcctgtaaatgtaat |
48702508 |
T |
|
| Q |
108 |
a |
108 |
Q |
| |
|
| |
|
|
| T |
48702507 |
a |
48702507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 48688329 - 48688231
Alignment:
| Q |
8 |
ccaacaaaatccagcagctccaatagtagaaatacctttacttttcaaggcttcaattatgggttgtgaaacttcaaaacctgtctcctataaatataa |
106 |
Q |
| |
|
|||||||||||||||||| || | || |||| |||||||||||| | ||||||||||||||||| || | ||||||||||| | |||||| ||||||| |
|
|
| T |
48688329 |
ccaacaaaatccagcagccccgacagatgaaacacctttactttttatggcttcaattatgggttttgcatcttcaaaacctttgtcctattaatataa |
48688231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 757 - 818
Target Start/End: Complemental strand, 47165666 - 47165602
Alignment:
| Q |
757 |
acaaaaactgttaaacatgtg---tagatgcattcaatatatgaaaccatgacctcctcaaaata |
818 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
47165666 |
acaaaaactgttcaacatgtgatgtagatgcattcaatatatgaaaccatgacatactcaaaata |
47165602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 411 - 517
Target Start/End: Complemental strand, 48696824 - 48696719
Alignment:
| Q |
411 |
tcatagggatctccgttgaagaagtcgggaaccaccacataatacccggttgctgcaaccttgtcggcaaacatccttcacaaaacaattcaacaaaatg |
510 |
Q |
| |
|
||||||||||| || | |||| |||| ||||| ||||||||||| || | ||| |||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
48696824 |
tcatagggatcaccatagaagtagtcaggaactaccacataataacctgctgccgcaaccttgtcggcaagattccttcac-aaacagatcaacaaaatg |
48696726 |
T |
|
| Q |
511 |
taaacca |
517 |
Q |
| |
|
||||||| |
|
|
| T |
48696725 |
taaacca |
48696719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 702 - 756
Target Start/End: Complemental strand, 48696137 - 48696083
Alignment:
| Q |
702 |
atcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaag |
756 |
Q |
| |
|
||||||||||| |||||| | || |||||||||||||||||| |||||||||||| |
|
|
| T |
48696137 |
atcataccttataattggagattcatatcctacaaaacaaataaagcatgtgaag |
48696083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 32150407 - 32150450
Alignment:
| Q |
27 |
ccaatagtagaaatacctttacttttcaaggcttcaattatggg |
70 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
32150407 |
ccaatagcagaaacacctttactttttaaggcttcaattatggg |
32150450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University