View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_26 (Length: 433)
Name: NF1107_high_26
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 83 - 433
Target Start/End: Original strand, 2243932 - 2244302
Alignment:
| Q |
83 |
tttatagaaaaaggatgttacattattcacaactattggatcagtcaaaggcttaataaacttgcgcgccaagtttcgtcaggcttacgggagtatgatc |
182 |
Q |
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| T |
2243932 |
tttatagaaaaaggatgttacattattcacaactattggatcagtcaaaggcttaataaacttgcgcgccaagttttgtcaggcttacgggagtatgatc |
2244031 |
T |
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| Q |
183 |
ctagcacaaaagaaatggtatgaggttatgagaactaaaaacaaattaaaattggaaa----tatttataaggaatacaattttattcaacccctttatt |
278 |
Q |
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| T |
2244032 |
ctagcacaaaagaaatggcacgaggttatgagaactaaaaacaaattaaaattggaaatatttatttataaggaataaaattttattcaacccctttatt |
2244131 |
T |
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| Q |
279 |
aaattaggttatgttagtcctaatttattattatacgctgcaaccttttaacaaagcaaacttcgtctttactcttcaatttta---------------- |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2244132 |
aaattaggttatgttagtcctaatttattattatacgctgcaaccttttaacaaagcaaacttcgtctttactcttcaattttatataatcttctttttt |
2244231 |
T |
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| Q |
363 |
tggaataatatgatgggttgactgcagcacaaatgatttttattttatgtgttgaaacatatctaattcat |
433 |
Q |
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| T |
2244232 |
tggaataatatgatgggttgactgcagcacaaatgatttttattttatgtgttgaaacatatctaattcat |
2244302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 31780640 - 31780794
Alignment:
| Q |
41 |
ttaccaaaatctgtggcatgnnnnnnntgtaaaagcaacacgtttatagaaaaaggatgttacattattcacaactattggatcagtcaaaggcttaata |
140 |
Q |
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| T |
31780640 |
ttaccaaaatctgtggcatgaaaaaaatgtaaaagcaacatgtttaaagaaa--ggatgttacactattcacaactattggatcactcaaaggcttaata |
31780737 |
T |
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| Q |
141 |
aacttgcgcgccaagtttcgtcaggcttacgggagtatgatcctagcacaaaagaaa |
197 |
Q |
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|||||| | |||||||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
31780738 |
aacttgtgtgccaagtttcgtcaggtttacggaagtatgattctagcacaaaagaaa |
31780794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 29059349 - 29059248
Alignment:
| Q |
90 |
aaaaaggatgttacattattcacaactattggatcagtcaaaggcttaataaacttgcgcgccaagtttcgtcaggcttacgggagtatgatcctagcac |
189 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |||||| || |||||| |||||||||||| |||||| ||| |||||||||||||||| || |
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| T |
29059349 |
aaaaaggatgctacattattcacaataattggatcagtggaaggctaaagaaacttacgcgccaagttttgtcaggtttatgggagtatgatcctagtac |
29059250 |
T |
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| Q |
190 |
aa |
191 |
Q |
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|| |
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| T |
29059249 |
aa |
29059248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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