View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_27 (Length: 432)
Name: NF1107_high_27
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 45 - 421
Target Start/End: Complemental strand, 5677775 - 5677399
Alignment:
| Q |
45 |
acagaagattattcagttgggaacttggtggcaagaactgatgcatatttgaatgatgtagcactaaaaaccattgcaggttctgtttcaatcttacata |
144 |
Q |
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| T |
5677775 |
acagaagattattcagttgggaacttggtggcaagaactgatgcatatttgaatgatgtagcactaaaaaccattgcaggttctgtttcaatcttacata |
5677676 |
T |
|
| Q |
145 |
tatcagaaagccttcttccaatagcagagaaaacaaaattggtgagcaaatgcatagatgcaattgcttatattgcttgcaaggaaagtcaattgtgtac |
244 |
Q |
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| T |
5677675 |
tttcagaaagccttcttccaatagcagagaaaacaaaattggtgagcaaatgcatagatgcaattgcttatattgcttgcaacgaaagtcaattgtgtac |
5677576 |
T |
|
| Q |
245 |
atctgtaagaagtgatagtggctccgacggagtgatgtcgtcttctgtatcatctcaacagagaccagttgttgattggtgggctgaagatctaactgtt |
344 |
Q |
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| T |
5677575 |
atctgtaagaagtgaaagtggctccgacggagtgatgtcgtcttctgtatcatctcaacagagaccagttgttgattggtgggctgaagatctaactgtt |
5677476 |
T |
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| Q |
345 |
cttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaacagtttgctattggtcctat |
421 |
Q |
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| T |
5677475 |
cttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaacagtttgctattggtcctat |
5677399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 45 - 421
Target Start/End: Original strand, 39777633 - 39778012
Alignment:
| Q |
45 |
acagaagattattcagttgggaacttggtggcaagaactgatgcatatttgaatgatgtagcactaaaaaccattgcaggttctgtttcaatcttacata |
144 |
Q |
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| T |
39777633 |
acagaagattattcggtcggaaatttggtaggaagaactgattcttacttgaatgaagttgcactcaagagcatgtcaggggcaatatccatcttacata |
39777732 |
T |
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| Q |
145 |
tatcagaaagccttcttccaatagcagagaaaacaaaattggtgagcaaatgcatagatgcaattgcttatattgcttgcaaggaaagtcaattgtgtac |
244 |
Q |
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|||||||| ||||||||||| ||||||||| ||||||| || |||| ||||||||||||||| || | || |||| |||||| ||||| || || | |
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| T |
39777733 |
catcagaaacacttcttccaattgcagagaaagcaaaattagttagcagatgcatagatgcaatagccttcatagcttccaaggagagtcagtttggttc |
39777832 |
T |
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| Q |
245 |
atctgtaagaagtgat---agtggctccgacggagtgatgtcgtcttctgtatcatctcaacagagaccagttgttgattggtgggctgaagatctaact |
341 |
Q |
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| T |
39777833 |
atctggtagaagtgatggtagtagcaatgaaagagtgatgaattcttccgctgcttctcaccaaaggccagctgttgattggtgggctgaagatctaaca |
39777932 |
T |
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| Q |
342 |
gttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaacagtttgctattggtcctat |
421 |
Q |
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| T |
39777933 |
gttcttaaaattgactttttccaaagagttctaattgcaatgatggctagagggtttaaaaattgtggtattggtcctat |
39778012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
47 |
Q |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 385
Target Start/End: Complemental strand, 47798250 - 47798162
Alignment:
| Q |
297 |
tctcaacagagaccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgat |
385 |
Q |
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| T |
47798250 |
tctcaccagaggccagctattgattggtgggctgaagatctaactgttcttagaattgtctttttccaaagagttctaattgcaatgat |
47798162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
47 |
Q |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaaca |
46424194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 47798420 - 47798347
Alignment:
| Q |
135 |
atcttacatatatcagaaagccttcttccaatagcagagaaaacaaaattggtgagcaaatgcatagatgcaat |
208 |
Q |
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| T |
47798420 |
atcttacatacatcagaaactcttcttccaattgcaaagaaagcaaaattagttagcagatgcataaatgcaat |
47798347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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