View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_28 (Length: 419)
Name: NF1107_high_28
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 5751590 - 5751305
Alignment:
| Q |
7 |
tccaataatataggtagttttagtatggtgtgtgaatgtttttgtcctaatttttaattctcttggtgagctatgtgcagtgttaaggacatcttgag-t |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
5751590 |
tccaataatataggtagttttagtatggtgtgtgaatgtttttgtcctaatttttaattctcttggtgagctatgtgcattgttaaggacatcttgagtt |
5751491 |
T |
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| Q |
106 |
tatatttaatttatt---tatgtatgattcttatacccttagaaagttattttaattatatcctagtttc-------nnnnnnnnnnnnngaatgatata |
195 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5751490 |
tatatttaatttatttaatatgtatgattcttatacccttagaaagttattttaattatatcctagtttctttttttcttttttatttttgaatgatata |
5751391 |
T |
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| Q |
196 |
tgttagttgttatgttannnnnnnnnnctcttttctagaacttcaactcaagacctttaactctatgacccttaactaatttttgtc |
282 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5751390 |
tgttagttgttatgtta-tttttttttctcttttctagaacttcaactcaagacctttaactctatgactcttaactaatttttgtc |
5751305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 18681628 - 18681343
Alignment:
| Q |
7 |
tccaataatataggtagttttagtatggtgtgtgaatgtttttgtcctaatttttaattctcttggtgagctatgtgcagtgttaaggacatcttgag-t |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
18681628 |
tccaataatataggtagttttagtatggtgtgtgaatgtttttgtcctaatttttaattctcttggtgagctatgtgcattgttaaggacatcttgagtt |
18681529 |
T |
|
| Q |
106 |
tatatttaatttatt---tatgtatgattcttatacccttagaaagttattttaattatatcctagtttc-------nnnnnnnnnnnnngaatgatata |
195 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18681528 |
tatatttaatttatttaatatgtatgattcttatacccttagaaagttattttaattatatcctagtttctttttttcttttttatttttgaatgatata |
18681429 |
T |
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| Q |
196 |
tgttagttgttatgttannnnnnnnnnctcttttctagaacttcaactcaagacctttaactctatgacccttaactaatttttgtc |
282 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18681428 |
tgttagttgttatgtta-tttttttttctcttttctagaacttcaactcaagacctttaactctatgactcttaactaatttttgtc |
18681343 |
T |
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