View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_38 (Length: 378)
Name: NF1107_high_38
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 78 - 349
Target Start/End: Complemental strand, 54238564 - 54238297
Alignment:
| Q |
78 |
ttacaggcacgaaaactttctcaccagtaatattatgttcttcatcaaatccaaccttcctattatttccttccttcccttcaaactcaattttctccaa |
177 |
Q |
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| T |
54238564 |
ttacaggcacgaaaactttctcaccagtaatattatgttcttcatcaaatccaaccttcctattatttccttcc----cttcaaactcaattttctccaa |
54238469 |
T |
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| Q |
178 |
gaatcttgcatttgtgnnnnnnnn-gttaatcaaatgcgtttttatttaaaaacccatggttagtttagtggcgtaggtttgtgacctcgaaaatgtgtg |
276 |
Q |
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| T |
54238468 |
gaatcttgcatttgtgaaaaaaaaagttaattaaatgcatttttatttaaaaacccatggttagtttagtggcgtaggtttgtgatctcgaaa-tgtgtg |
54238370 |
T |
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| Q |
277 |
tttttctttaggtctctggttcaaatttttctaatgctaacaatttatatgttgggtcatcattcgttaatag |
349 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54238369 |
tttttctttagatctctggttcaaatttttctaatgctaacaatttatatgttgggtcatcattcgttaatag |
54238297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 54238635 - 54238589
Alignment:
| Q |
10 |
ataatactgtggcggaataataaattatgtgtgaatgctatataatc |
56 |
Q |
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| T |
54238635 |
ataatactgtggcggaataataaattatgtgtgaatgctatataatc |
54238589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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