View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_39 (Length: 378)
Name: NF1107_high_39
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 107 - 321
Target Start/End: Complemental strand, 1952767 - 1952553
Alignment:
| Q |
107 |
gtacaaccaattttcatatgaactctacaccgccataaaaattgttaatttttcaactctgcgatttttatttagaggaatttcaactctacgattgtgt |
206 |
Q |
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| T |
1952767 |
gtacaaccaattttcatatgaactctacaccgccataaaaattgttaatttttcaactctgcgatttttatttagaggaatttcaactctacgattgtgt |
1952668 |
T |
|
| Q |
207 |
aaagggtttgaaatttacttgtgtttatagtggttgaaataaacgacttgatcgacttccatacacttaacacatagtccaatgaataaagaccattgat |
306 |
Q |
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| T |
1952667 |
aaagggtttgaaaattacttgtgtttatagtggttgaaataaacgacttgatcgacttccatacacttaacacatagtccaataaataaagaccattgat |
1952568 |
T |
|
| Q |
307 |
tgagagacaattgaa |
321 |
Q |
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||||||||||||||| |
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| T |
1952567 |
tgagagacaattgaa |
1952553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 9452999 - 9452967
Alignment:
| Q |
340 |
ttttaagatgaagcggtgaattcattaaatata |
372 |
Q |
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| T |
9452999 |
ttttaagatgaagcggtaaattcattaaatata |
9452967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 46424186 - 46424154
Alignment:
| Q |
340 |
ttttaagatgaagcggtgaattcattaaatata |
372 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
46424186 |
ttttaagatgaagcgatgaattcattaaatata |
46424154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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