View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_high_4 (Length: 681)

Name: NF1107_high_4
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_high_4
NF1107_high_4
[»] chr7 (4 HSPs)
chr7 (1-413)||(31200879-31201292)
chr7 (418-603)||(31200657-31200842)
chr7 (498-587)||(39051324-39051413)
chr7 (497-581)||(285651-285733)
[»] chr5 (6 HSPs)
chr5 (497-580)||(10353940-10354023)
chr5 (497-562)||(33900041-33900106)
chr5 (498-586)||(29638812-29638900)
chr5 (514-561)||(1623346-1623393)
chr5 (498-561)||(38475912-38475975)
chr5 (498-527)||(1436911-1436940)
[»] scaffold0010 (1 HSPs)
scaffold0010 (498-592)||(250355-250449)
[»] chr8 (2 HSPs)
chr8 (498-587)||(3694151-3694240)
chr8 (498-550)||(14294405-14294457)
[»] chr4 (3 HSPs)
chr4 (498-586)||(19141972-19142060)
chr4 (498-586)||(41500069-41500157)
chr4 (498-592)||(43405533-43405627)
[»] chr3 (2 HSPs)
chr3 (498-586)||(675658-675746)
chr3 (497-592)||(27836735-27836828)
[»] chr1 (6 HSPs)
chr1 (498-586)||(4816197-4816285)
chr1 (498-586)||(22581695-22581783)
chr1 (498-586)||(34059766-34059854)
chr1 (497-582)||(8265646-8265729)
chr1 (533-586)||(10069247-10069300)
chr1 (497-533)||(12371580-12371616)
[»] scaffold0018 (1 HSPs)
scaffold0018 (497-592)||(38677-38770)
[»] chr2 (1 HSPs)
chr2 (497-595)||(40142214-40142312)


Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 31201292 - 31200879
Alignment:
Q  1 ctgtttatatataacaagaataattagtcctactccaatcagttttccctatcttggtaaccacggaaaaaatcagcatccgagggtctcaaactaaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201292 ctgtttatatataacaagaataattagtcctactccaatcagttttccctatcttggtaaccacggaaaaaatcagcatccgagggtctcaaactaaacg 31201193  T
Q  101 -ggtagtcctagtaggatctccggacacaggtgaaaattgacatttatatgaccacagatctcatcctatcatgattttggtttgcacttgataacaaat 199  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201192 aggtagtcctagtaggatctccggacacaggtgaaaattgacatttatatgaccacagatctcatcctatcatgattttggtttgcacttgataacaaat 31201093  T
Q  200 taattacattgtcattatagtatgatatcatatggtatttgagatgatgcacgaaaaaacgggccttgtttgttatcattgccttggaacaaaaagggtg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201092 taattacattgtcattatagtatgatatcatatggtatttgagatgatgcacgaaaaaacgggccttgtttgttatcattgccttggaacaaaaagggtg 31200993  T
Q  300 tagaattactatctgctacgggttcaagaaaggacctgtgaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaactaatt 399  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200992 tagaattactatttgctacgggttcaagaaaggacatgtgaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaactaatt 31200893  T
Q  400 aattgagtgggtgt 413  Q
    ||||||||||||||    
T  31200892 aattgagtgggtgt 31200879  T

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Target: chr7; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 418 - 603
Target Start/End: Complemental strand, 31200842 - 31200657
Alignment:
Q  418 tcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttacttaatttacattgtactaaaatgttgaataatcaactcatta 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200842 tcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttacttaatttacattgtactaaaatgttgaataatcaactcatta 31200743  T
Q  518 tcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcattatgcgttatatt 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31200742 tcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcattatgcgttatatt 31200657  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 498 - 587
Target Start/End: Original strand, 39051324 - 39051413
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccattt 587  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||||||| ||| |||||||||||||||| ||||||    
T  39051324 gttgaataatcaactcatcatcaatcttgtccgccacatctctctcaatataagtcacaagataatcattcatccattcatctcccattt 39051413  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 581
Target Start/End: Original strand, 285651 - 285733
Alignment:
Q  497 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatctt 581  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || |||||||||    
T  285651 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatctt 285733  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 497 - 580
Target Start/End: Complemental strand, 10354023 - 10353940
Alignment:
Q  497 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatct 580  Q
    |||||||| |||| ||||||||||||||||| ||||| |||| | | |||||||| ||| ||||||| ||||||||||||||||    
T  10354023 tgttgaatgatcacctcattatcaatgttgttgaacacatctttctcaatataagccactagacaatcattcatccattcatct 10353940  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 562
Target Start/End: Complemental strand, 33900106 - 33900041
Alignment:
Q  497 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaa 562  Q
    |||||||||||||||||||||||||||||| || | | ||||| ||||||||||  ||||||||||    
T  33900106 tgttgaataatcaactcattatcaatgttgccggatagatctcgtttaatataaaccacaagacaa 33900041  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 586
Target Start/End: Complemental strand, 29638900 - 29638812
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 586  Q
    |||||||||||||||||| |||||| |||||   || |||||| | ||||||||| || ||||||| ||||||||| |||||| |||||    
T  29638900 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtgacgagacaatcattcatccaatcatctcccatt 29638812  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 1623346 - 1623393
Alignment:
Q  514 attatcaatgttgtcgaacatatctcttttaatataagtcacaagaca 561  Q
    ||||||||||||||||||||||||| || |||||||| |||| |||||    
T  1623346 attatcaatgttgtcgaacatatcttttctaatataaatcaccagaca 1623393  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 561
Target Start/End: Complemental strand, 38475975 - 38475912
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagaca 561  Q
    ||||||||||||||||||||||||  || | ||||| |||||| | ||| ||||||||||||||    
T  38475975 gttgaataatcaactcattatcaacctttttgaacacatctctctcaatgtaagtcacaagaca 38475912  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 527
Target Start/End: Original strand, 1436911 - 1436940
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgt 527  Q
    ||||||||||||||||||||||||||||||    
T  1436911 gttgaataatcaactcattatcaatgttgt 1436940  T

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Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 498 - 592
Target Start/End: Original strand, 250355 - 250449
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 592  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||| ||||    
T  250355 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatttgatta 250449  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 498 - 587
Target Start/End: Original strand, 3694151 - 3694240
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccattt 587  Q
    ||||||||||||| ||||  ||||| |||||   || |||||| | |||||||||||||||||||| |||||||||||||||| ||||||    
T  3694151 gttgaataatcaattcatcgtcaatcttgtccgccacatctctctcaatataagtcacaagacaatcattcatccattcatctcccattt 3694240  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 498 - 550
Target Start/End: Complemental strand, 14294457 - 14294405
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataa 550  Q
    ||||||||||| | | |||||||||| ||||||||| |||||| |||||||||    
T  14294457 gttgaataatccattaattatcaatggtgtcgaacacatctctcttaatataa 14294405  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 498 - 586
Target Start/End: Complemental strand, 19142060 - 19141972
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 586  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  19142060 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 19141972  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 498 - 586
Target Start/End: Original strand, 41500069 - 41500157
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 586  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  41500069 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 41500157  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 498 - 592
Target Start/End: Complemental strand, 43405627 - 43405533
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 592  Q
    |||||||||||||||||| |||||| ||||||  ||||||||| | ||||||||| ||  |||||| |||||| || |||||| |||||| ||||    
T  43405627 gttgaataatcaactcatcatcaattttgtcggccatatctctctcaatataagttacgggacaatcattcatgcaatcatctcccattttatta 43405533  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 498 - 586
Target Start/End: Original strand, 675658 - 675746
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 586  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  675658 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 675746  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 592
Target Start/End: Complemental strand, 27836828 - 27836735
Alignment:
Q  497 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 592  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || ||||||||||| ||| ||||    
T  27836828 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta 27836735  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 498 - 586
Target Start/End: Complemental strand, 4816285 - 4816197
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 586  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  4816285 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 4816197  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 586
Target Start/End: Complemental strand, 22581783 - 22581695
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 586  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||  |||||| |||||    
T  22581783 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatcccatcatctcccatt 22581695  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 586
Target Start/End: Complemental strand, 34059854 - 34059766
Alignment:
Q  498 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 586  Q
    |||||||||||||||||| |||||| |||||   || |||||| | ||||||||| || ||||||| ||||||||| |||||| |||||    
T  34059854 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagttacgagacaatcattcatccaatcatctcccatt 34059766  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 582
Target Start/End: Original strand, 8265646 - 8265729
Alignment:
Q  497 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttc 582  Q
    ||||||| |||||||  ||||||||| ||||| || || |||||   |||||||||||||||||||| |||||| |||||||||||    
T  8265646 tgttgaacaatcaacctattatcaatattgtctaatatgtctctc--aatataagtcacaagacaatcattcattcattcatcttc 8265729  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 586
Target Start/End: Complemental strand, 10069300 - 10069247
Alignment:
Q  533 atatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 586  Q
    ||||| |||| |||||||||||| ||||||| ||||||||||||||| ||||||    
T  10069300 atatccctttcaatataagtcactagacaatcattcatccattcatcctccatt 10069247  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 497 - 533
Target Start/End: Original strand, 12371580 - 12371616
Alignment:
Q  497 tgttgaataatcaactcattatcaatgttgtcgaaca 533  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  12371580 tgttgaataatcaactcatcatcaatgttgccgaaca 12371616  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 592
Target Start/End: Complemental strand, 38770 - 38677
Alignment:
Q  497 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 592  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || ||||||||||| ||| ||||    
T  38770 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta 38677  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 595
Target Start/End: Complemental strand, 40142312 - 40142214
Alignment:
Q  497 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcattatgc 595  Q
    ||||||||||||||||||  |||||||||||| |||| |   || | |||||||||||  |||||||  |||||||| |||||| |||||| |||||||    
T  40142312 tgttgaataatcaactcacgatcaatgttgtctaacacactcctctcaatataagtcatgagacaatcgttcatccactcatctcccatttgattatgc 40142214  T

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