View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_43 (Length: 376)
Name: NF1107_high_43
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 29245373 - 29245272
Alignment:
| Q |
83 |
taagttaggcttcaatacgtaatagtgtgtt-ggatgaactaattgaaaaatctagagaattgaaaatttctataaaacaaatagaaagctttattgtat |
181 |
Q |
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| T |
29245373 |
taagttaggctccaatacataatagtgtgtttggatgaactaattgaaaaatttagagaattgaaattttctataaatcaaataaaaagctttattgtat |
29245274 |
T |
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| Q |
182 |
tc |
183 |
Q |
| |
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|| |
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| T |
29245273 |
tc |
29245272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 29285162 - 29285100
Alignment:
| Q |
267 |
taaaaaattatacggaatattttaggattcatatttataaggtagtggggggattttaaaatc |
329 |
Q |
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| T |
29285162 |
taaaaaattatacggaatattttaggattcatatttataaggtagtggggggattttaaaatc |
29285100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 29285443 - 29285389
Alignment:
| Q |
77 |
tgcatataagttaggcttcaatacgtaatagtgtgttggatgaactaattgaaaa |
131 |
Q |
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| T |
29285443 |
tgcatataagttaggcttcaatacataatagtgtgttggatgaactaattgaaaa |
29285389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 29245016 - 29244955
Alignment:
| Q |
262 |
ttttgtaaaaaattatacggaatattttaggattcatatttataaggtagtggggggatttt |
323 |
Q |
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| T |
29245016 |
ttttgaaaaaaattgtacaaattattttaagattcatatttataaggtaatggggggatttt |
29244955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 29285386 - 29285354
Alignment:
| Q |
151 |
tctataaaacaaatagaaagctttattgtattc |
183 |
Q |
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| T |
29285386 |
tctataaaacaaatagaaagctttattatattc |
29285354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 7353242 - 7353198
Alignment:
| Q |
327 |
atcatcattaggctaaacacataggtaataattaaacacataatt |
371 |
Q |
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| T |
7353242 |
atcatcattaggctaaacacataggtaataattaaacacataatt |
7353198 |
T |
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