View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_44 (Length: 372)
Name: NF1107_high_44
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 40 - 360
Target Start/End: Complemental strand, 13693298 - 13692978
Alignment:
| Q |
40 |
gagcaagttttggcaatccaggtaacaaatactcagattgtgaaagtggcaattcaatcaacttctgatgagtatgaaagcatatgctattaacagaaca |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13693298 |
gagcaagttttggcaatccaggtaacaaatactcagattgtgaaattggcaattcaatcaacttctgatgagtatgaaagtatatgctattaacagaaca |
13693199 |
T |
|
| Q |
140 |
agattgagtgaaaaatggaacaccaagtagcccaaaattcttggcaacatcaagagcccaaggcataaatgcatcaaagataacgcaatttggtggggtt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13693198 |
agattgagtgaaaaatggaacaccaagtagcccaaaattcttggcaacatcaagagcccaaggcataaatgcatcaaagataacgcaatttggtggggtt |
13693099 |
T |
|
| Q |
240 |
tttgagctggaaagcttatgaagaagctcacatagagtttgtgatccaactctccagaaggtctgtatgtaaacgtccaagctctttgccgattcatacc |
339 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13693098 |
tttgagctagaaagcttatgaagaagctcacatagagtttgtgatccaactctccagaaggtctgtatgtaaacgtcaaagctctttgccgattcatacc |
13692999 |
T |
|
| Q |
340 |
cttcgtcgtcatagccatctg |
360 |
Q |
| |
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|| |||| || |||||||||| |
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| T |
13692998 |
ctccgtcatcgtagccatctg |
13692978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 40 - 360
Target Start/End: Original strand, 13673078 - 13673398
Alignment:
| Q |
40 |
gagcaagttttggcaatccaggtaacaaatactcagattgtgaaagtggcaattcaatcaacttctgatgagtatgaaagcatatgctattaacagaaca |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||| ||||||||||||| ||||||| ||||||||||| |
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| T |
13673078 |
gagcaagttttggcaatccaggtaacaaatactcagattgtgtaagtggcaactctatcaacttctcatgagtatgaaagtatatgctgttaacagaaca |
13673177 |
T |
|
| Q |
140 |
agattgagtgaaaaatggaacaccaagtagcccaaaattcttggcaacatcaagagcccaaggcataaatgcatcaaagataacgcaatttggtggggtt |
239 |
Q |
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||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |
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| T |
13673178 |
agattgagtgaaaaatgcaacaccaactagtccaaaactcttggcaacatcaagagcccaaggcataaatgcatcaaagataacacaatttggagggtat |
13673277 |
T |
|
| Q |
240 |
tttgagctggaaagcttatgaagaagctcacatagagtttgtgatccaactctccagaaggtctgtatgtaaacgtccaagctctttgccgattcatacc |
339 |
Q |
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|||||||| ||||| ||||||||||| ||| | ||| || ||||||||| ||||| ||||| | ||||||| || ||||||| ||| |||||||| | |
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| T |
13673278 |
tttgagctagaaagtttatgaagaagttcagaaagatcttttgatccaaccctccaaaaggtatccatgtaaatttctaagctctctgctgattcatagc |
13673377 |
T |
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| Q |
340 |
cttcgtcgtcatagccatctg |
360 |
Q |
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|| | || ||||||||||||| |
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| T |
13673378 |
ctccatcatcatagccatctg |
13673398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 40 - 301
Target Start/End: Complemental strand, 13686834 - 13686573
Alignment:
| Q |
40 |
gagcaagttttggcaatccaggtaacaaatactcagattgtgaaagtggcaattcaatcaacttctgatgagtatgaaagcatatgctattaacagaaca |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||| |||||||||| || ||| |||||||||||||| |
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| T |
13686834 |
gagcaagttttggcaatccaggtaacaaatactcagattgtgtaagtggcaactctatcaacttctcatgagtatgatagtatacactattaacagaaca |
13686735 |
T |
|
| Q |
140 |
agattgagtgaaaaatggaacaccaagtagcccaaaattcttggcaacatcaagagcccaaggcataaatgcatcaaagataacgcaatttggtggggtt |
239 |
Q |
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||||||||| ||||| | |||||||| || |||||| |||| ||||||||||| ||||||| | |||||||||||||||||| |||||||| ||| || |
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| T |
13686734 |
agattgagtaaaaaaagcaacaccaactaatccaaaactctttccaacatcaagaacccaaggtagaaatgcatcaaagataacacaatttggagggttt |
13686635 |
T |
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| Q |
240 |
tttgagctggaaagcttatgaagaagctcacatagagtttgtgatccaactctccagaaggt |
301 |
Q |
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| T |
13686634 |
tctgagcttgaaagtttatgaagaagctctgagagagtttgtgatccaactttccagaaggt |
13686573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 9452967 - 9453005
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaa |
45 |
Q |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaa |
9453005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 46424154 - 46424192
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaa |
45 |
Q |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaa |
46424192 |
T |
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