View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_high_49 (Length: 361)

Name: NF1107_high_49
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_high_49
NF1107_high_49
[»] chr4 (6 HSPs)
chr4 (56-361)||(20093414-20093719)
chr4 (7-47)||(9452967-9453007)
chr4 (183-221)||(20093338-20093376)
chr4 (56-105)||(29669651-29669700)
chr4 (122-163)||(32973228-32973269)
chr4 (123-163)||(25669898-25669938)
[»] chr1 (2 HSPs)
chr1 (7-47)||(46424154-46424194)
chr1 (56-89)||(45264744-45264777)
[»] chr8 (1 HSPs)
chr8 (56-91)||(22277606-22277641)
[»] chr2 (2 HSPs)
chr2 (123-178)||(7706277-7706332)
chr2 (56-105)||(21214174-21214223)
[»] chr5 (1 HSPs)
chr5 (114-163)||(2721893-2721942)
[»] chr3 (1 HSPs)
chr3 (245-286)||(40765935-40765975)
[»] chr7 (1 HSPs)
chr7 (56-163)||(40137613-40137718)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 56 - 361
Target Start/End: Original strand, 20093414 - 20093719
Alignment:
Q  56 tttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctatagattggaccactcatcatttatatacacgcatcaagcccaataatgctg 155  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||| ||    
T  20093414 tttgtaaggatgagttaatctctaaattttaacatgacatcagagcttatagattgggccactcattatttatatacacgcatcaagcccaataatgttg 20093513  T
Q  156 ggtgtgagagttgtattgagaaaaatacaagttttacatcagataaataaaactcttgataagaatgacaatcctcactttatagatcaattttgtagaa 255  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  20093514 ggtgtgagaggtgtattgagaaaaatacaaattttacatcagatagataaaactcttgataaaaatgacactcctcactttatagatcaattttatagaa 20093613  T
Q  256 ttgtgttaggctcaaccataaatttttaagaataaatataaagagataagtaactcagaaattaaatgggaaagaatggacggggaatggggaatcagtg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20093614 ttgtgttaggctcaaccataaatttttaagaataaatataaagagataagtaactcagaaattaaatgggaaagaatggacagggaatggggaatcagtg 20093713  T
Q  356 agagac 361  Q
    ||||||    
T  20093714 agagac 20093719  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
Q  7 tatatttaatgaattcaccgcttcatcttaaaagagcaaca 47  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  9452967 tatatttaatgaatttaccgcttcatcttaaaagagcaaca 9453007  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 20093338 - 20093376
Alignment:
Q  183 caagttttacatcagataaataaaactcttgataagaat 221  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  20093338 caagtcttacatcagataaataagactcttgataagaat 20093376  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 29669700 - 29669651
Alignment:
Q  56 tttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 105  Q
    |||||||||||||||||| ||| |||||||||||||  |||| |||||||    
T  29669700 tttgtaaggatgagttaaaccccaaatttcaacatggtatcagagcctat 29669651  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 32973228 - 32973269
Alignment:
Q  122 catttatatacacgcatcaagcccaataatgctgggtgtgag 163  Q
    ||||||||||||||||| |||||||||| ||||||| |||||    
T  32973228 catttatatacacgcatgaagcccaatagtgctgggggtgag 32973269  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 25669898 - 25669938
Alignment:
Q  123 atttatatacacgcatcaagcccaataatgctgggtgtgag 163  Q
    ||||||||||||||| ||||||||||| ||||||| |||||    
T  25669898 atttatatacacgcaccaagcccaatagtgctgggcgtgag 25669938  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
Q  7 tatatttaatgaattcaccgcttcatcttaaaagagcaaca 47  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  46424154 tatatttaatgaattcatcgcttcatcttaaaagagcaaca 46424194  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 45264744 - 45264777
Alignment:
Q  56 tttgtaaggatgagttaatccctaaatttcaaca 89  Q
    |||||||||||||||||||||| |||||||||||    
T  45264744 tttgtaaggatgagttaatccccaaatttcaaca 45264777  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 22277606 - 22277641
Alignment:
Q  56 tttgtaaggatgagttaatccctaaatttcaacatg 91  Q
    |||||||||||||||||||||| |||||||||||||    
T  22277606 tttgtaaggatgagttaatccccaaatttcaacatg 22277641  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 7706332 - 7706277
Alignment:
Q  123 atttatatacacgcatcaagcccaataatgctgggtgtgagagttgtattgagaaa 178  Q
    |||||||||||| ||||||||||||||||| |||| ||||| | ||| ||||||||    
T  7706332 atttatatacacacatcaagcccaataatgttgggcgtgaggggtgtcttgagaaa 7706277  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 21214223 - 21214174
Alignment:
Q  56 tttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 105  Q
    |||||||||||||||||  ||| |||||||||||||  ||||||||||||    
T  21214223 tttgtaaggatgagttaggccccaaatttcaacatggtatcaaagcctat 21214174  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 2721893 - 2721942
Alignment:
Q  114 ccactcatcatttatatacacgcatcaagcccaataatgctgggtgtgag 163  Q
    |||| ||||||||||||| ||||||||||||||| | |||| ||||||||    
T  2721893 ccacccatcatttatataaacgcatcaagcccaacagtgcttggtgtgag 2721942  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 40765975 - 40765935
Alignment:
Q  245 attttgtagaattgtgttaggctcaaccataaatttttaaga 286  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  40765975 attttgtagaattgtgttaggctcaaacat-aatttttaaga 40765935  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 40137718 - 40137613
Alignment:
Q  56 tttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctatagattggaccactcatcatttatatacacgcatcaagcccaataatgctg 155  Q
    |||||||||||||||||  ||| |  ||||||||||  || | ||||||| ||| || |||| || ||||||||||| | || ||||||||||| |||||    
T  40137718 tttgtaaggatgagttaggcccga--tttcaacatggtattagagcctatcgatcgggccacccaccatttatatactcacaccaagcccaatagtgctg 40137621  T
Q  156 ggtgtgag 163  Q
    | ||||||    
T  40137620 gatgtgag 40137613  T

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