View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_53 (Length: 357)
Name: NF1107_high_53
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 53 - 351
Target Start/End: Original strand, 38917189 - 38917487
Alignment:
| Q |
53 |
tggaatggaaaggtattaccaactttttgactcagtggtgtagtctgtaaacagactctttattcaatttctgctaactcaccttccaatttatgaaagc |
152 |
Q |
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| T |
38917189 |
tggaatggaaaggtattaccaactttttgactcagtggtgtagtctgtaaacagactctttattcaatttctgctaactcaccttccaatttatgaaagc |
38917288 |
T |
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| Q |
153 |
tggcatgttttgcagttgttaaataaagactacttgtgttattgagtctctcatctaaaagtaaatatatgcagatgttcaagtatggggttgttcgaat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38917289 |
tggcatgttttgcagttgttaaataaagactacttgtgttattgagtctctcatctaaaagtaaatatatgcagatgttcaagtatggggttgttcgaat |
38917388 |
T |
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| Q |
253 |
gcatgacttacttcaagatgtgcagtattgggagaaattctacttgtgtggtcgtttacaaaaaccagtatgttacaatttttctcctcttcatctcac |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38917389 |
gcatgacttacttcaagatgtgcagtattgggagaaattctacttgtgtggtcgtttacaaaaaccagtatgttacaatttttctcctcttcatgtcac |
38917487 |
T |
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