View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_69 (Length: 297)
Name: NF1107_high_69
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_69 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 297
Target Start/End: Original strand, 21113903 - 21114170
Alignment:
| Q |
30 |
aaagcatacggaaacactgtcatggagtggagcctaatgatgcatttgacagtacaatgaacaatatataaatcaagtataatatagacaatagtatagc |
129 |
Q |
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| T |
21113903 |
aaagcatacggaaacactgtcatggagtggagcctaatgatgcatttgacagtgcaatgaacaatatataaatcaaggataatatagacaatagtatagt |
21114002 |
T |
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| Q |
130 |
ttcttgtattaataataatggaatctttcnnnnnnnnnnnnnnnntaatgaaatgatagattaggtgaggggaagagcaaacaacaccgttgaccaaacc |
229 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21114003 |
ttcttgtattaataataatggaatctttcaaaaaacataaaaaaataataaaatgatagattaggtgaggggaagagcaaacagcaccgttgaccaaacc |
21114102 |
T |
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| Q |
230 |
atagaaggtgtaaaaagaaccgagttgtgtgatggtgtaaaggttaaagtgaaagctcaagtatcctt |
297 |
Q |
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||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21114103 |
atagaaggtgtaaaaagaatcgtgttgtgtgatagtgtaaaggttaaagtgaaagctcaagtatcctt |
21114170 |
T |
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