View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1107_high_7 (Length: 647)
Name: NF1107_high_7
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 23 - 637
Target Start/End: Original strand, 5242827 - 5243436
Alignment:
| Q |
23 |
atctatataaaccccttaaccatttgttttaaccacatagcttcgagtacttactgatcaagaaagtgacactacatagcataatcaaccaatccaaatt |
122 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5242827 |
atctatataaaccccttaaccatttattttaaccaca--gcttcgagtacttactgatcaagaaagtgacactacatagcataatcaaccaatccaaatt |
5242924 |
T |
|
| Q |
123 |
tgagaaaaaacaatggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagagactgttgttcctggtggcactggtggcaaga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5242925 |
tgagaaaaaacaatggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagagactgttgttcctggtggcactggtggcaaga |
5243024 |
T |
|
| Q |
223 |
gccttgaggctcaggaacatcttgctgaaggttatacattagtttatgattaatgcatattattatatacttaaaatttgatactaatttttgatgttta |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5243025 |
gccttgaggctcaggaacatcttgctgaaggttatacattagtttatgattaatgcatattattatatacttaaaatttgatactaatttttggtgttta |
5243124 |
T |
|
| Q |
323 |
attaaaggaaggagcaagggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggaga |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5243125 |
attaaaggaaggagcaagggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggaga |
5243224 |
T |
|
| Q |
423 |
agtcaggaggagaacgtgctgaagaggaaggtattgatattgatgagtccaagttcaagacnnnnnnnnnnnnnnnnnnnaggagccagaacaagtgatc |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5243225 |
agtcaggaggagaacgtgctgaagaggaaggtattgatattgatgagtccaagttcaagac---tggtggtggtggtggtaggagccagaacaagtgatc |
5243321 |
T |
|
| Q |
523 |
catcatcatcacctcttatgtgctagctaactttaatgtgtgtcaaaaactagtttgttttaggtcatgctgttagttggttatatatatagctaaccaa |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5243322 |
catcatcatcacctcttatgtgctagctaactttaatgtgtgtcaaaaactagtttgttttaggtcatgctgttagttggttatatatatagctaaccaa |
5243421 |
T |
|
| Q |
623 |
tgatcaaagtctgtg |
637 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
5243422 |
tgatcaaagtgtgtg |
5243436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 341 - 477
Target Start/End: Complemental strand, 25523121 - 25522985
Alignment:
| Q |
341 |
ggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtg |
440 |
Q |
| |
|
||||||||||||||||| ||||| | |||| |||||||||||| || ||||| |||||||||||||| || |||||||| ||||| || | | |||||| |
|
|
| T |
25523121 |
ggagggcagacaaggaaagagcagatggggagagaagggtatcaagaaatgggccgtaaaggaggactcagtactatggataagtctggtgaacaacgtg |
25523022 |
T |
|
| Q |
441 |
ctgaagaggaaggtattgatattgatgagtccaagtt |
477 |
Q |
| |
|
||| |||||||| || || |||||||| |||||||| |
|
|
| T |
25523021 |
ctgctgaggaaggaatagacattgatgaatccaagtt |
25522985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 25523391 - 25523273
Alignment:
| Q |
135 |
atggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagagactgttgttcctggtggcactggtggcaagagccttgaggctc |
234 |
Q |
| |
|
||||| ||| ||||||||||||| |||| |||||||||| ||||| || || || |||||| ||||||||||||| ||||| ||||| ||||| |||| |
|
|
| T |
25523391 |
atggcgtctcaacaacaaaaccgtgaagaacttgaggagagggcaaggcttggtgaaactgttattcctggtggcacaggtggaaagagtcttgaagctc |
25523292 |
T |
|
| Q |
235 |
aggaacatcttgctgaagg |
253 |
Q |
| |
|
| |||| ||||||||||| |
|
|
| T |
25523291 |
aacaacaccttgctgaagg |
25523273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 394
Target Start/End: Complemental strand, 25523181 - 25523128
Alignment:
| Q |
341 |
ggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatggga |
394 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||| ||||| ||||||||| |
|
|
| T |
25523181 |
ggagggcagacaaggaagcagcagttagggtcagaaggatatcaagagatggga |
25523128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 2954117 - 2954053
Alignment:
| Q |
135 |
atggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagagactgttgt |
199 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| ||||||||| | |||||| ||||||| |
|
|
| T |
2954117 |
atggcatctcaacaacaaaagtgacaagagcttgaggaaaaggcaaaggagggagagcctgttgt |
2954053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University