View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_70 (Length: 289)
Name: NF1107_high_70
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_70 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 49 - 289
Target Start/End: Original strand, 2757196 - 2757436
Alignment:
| Q |
49 |
ctaaagcaggtggtgtttctctaaattttgaaatacatctaaacaacattatcaaacatgaaatcagtcatgaatcactaaggtctttcttaaggttgta |
148 |
Q |
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| T |
2757196 |
ctaaagcaggtggtgtttctctaaattttgaaatacatctaaacaacattatcaaacatgaaatcagtcatgaatcactaaggtctttcttaaggttgta |
2757295 |
T |
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| Q |
149 |
atgtgggttggactacaattattatttttattcaaaatgccttaataacaagagatcatttattttccatgtacaaccatttacatcaatttactctcct |
248 |
Q |
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| T |
2757296 |
atgtgggttggactacaattattatttttattcaaaatgccttaataacaagagatcatttattttccatgtacaaccatttacatcaatttactctcct |
2757395 |
T |
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| Q |
249 |
tttctttaccattaacaactcatttttggtgaatatcttgt |
289 |
Q |
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| T |
2757396 |
tttctttaccattaacaactcatttttggtgaatatcttgt |
2757436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 39805369 - 39805329
Alignment:
| Q |
113 |
cagtcatgaatcactaaggtctttcttaaggttgtaatgtg |
153 |
Q |
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| T |
39805369 |
cagtcatgaatcactaaggtctttattatggttgtaatgtg |
39805329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
47 |
Q |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
| Q |
7 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
47 |
Q |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaaca |
46424194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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