View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_72 (Length: 287)
Name: NF1107_high_72
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_72 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36808330 - 36808106
Alignment:
| Q |
1 |
tccattgtgtattactgaatgatgatgattgaaaattgatgcaacattgttctcaatgtgttagcaaagtgtaaaactacaatgttgctaatgctaggcc |
100 |
Q |
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| T |
36808330 |
tccattgtgtattactgaatgatggtgatttaaaattgatgcaacattgttctcaatgtgttagcaaagtgtaaaactacaatgttgctaatgctaggcc |
36808231 |
T |
|
| Q |
101 |
tgtttagtggtcactattaagaataaatcctccttgggcaacattagtgacctgcttgtaga-ttcatagtagcannnnnnnctgatcaatagattcaga |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
36808230 |
tgtttagtggtcactattaagaataaatcctccttgagcaacattagtgacctgcttgtagatttcatagtagcatttttttctgatcaatagattcaga |
36808131 |
T |
|
| Q |
200 |
gtaatatcatccttattaattattg |
224 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
36808130 |
gtaatatcatccttattaattattg |
36808106 |
T |
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