View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_73 (Length: 286)
Name: NF1107_high_73
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 42968297 - 42968553
Alignment:
| Q |
6 |
agaagcaaaggccttgagacattcagttttatgtccaataccatacactgtggaactagtgaattgtc-----acaatccatggagcacccacccaaccc |
100 |
Q |
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| T |
42968297 |
agaaacaaaggccttgagacattcagttttatgtccaataccatacactgtggaactagtgaattgtcatgtcacaatccatggagcacccacccaaccc |
42968396 |
T |
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| Q |
101 |
aagcatggatgattgagcatatctgctaataaagctgttcttttctgtcatgcaaccatctccaactgttgaaaaaagcacataacagtcagtcatattg |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42968397 |
aagcatggatggttgagcatatctgctaataaagctgttctttcctgtcatgcaaccatctccaactgttgaaaaaagcacataacaatcagtcatattg |
42968496 |
T |
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| Q |
201 |
agcatcttgtgtatgatttatttttaccatttcttggttcttgtataaagttccctc |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42968497 |
agcatcttgtgtatgatttatttttaccatttcttggttcttgtataaagttccctc |
42968553 |
T |
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