View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_74 (Length: 282)
Name: NF1107_high_74
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_74 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 62 - 224
Target Start/End: Original strand, 4796893 - 4797054
Alignment:
| Q |
62 |
tttatgtgttaatatttgatttgtaatgttaactctcttgttgatagaaataatggaaatgatggagttatgttatcatatatgctacacactctgtttt |
161 |
Q |
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| T |
4796893 |
tttatgtgttaatgtttgatttgtaatgtta-ctctcttgttcatagaaataatggaaatgatggagttatgttatcatatatgctacacactctctttt |
4796991 |
T |
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| Q |
162 |
gagttctgcctccctcctttcatggattggatggaatcatttgtcacaatgaatatgacagca |
224 |
Q |
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| T |
4796992 |
gagttctgtctccctcctttcatggattggatggaatcatttgtgacaatgaatatgacagca |
4797054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 4788913 - 4788796
Alignment:
| Q |
107 |
agaaataatggaaatgatggagttatgttatcatatatgctacacactctgttttgagttctgcctccctcctttcatggattggatggaatcatttgtc |
206 |
Q |
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| T |
4788913 |
agaaacaatggaaatgatggagttatgttatcatatatgctacacactctgttttgagttctgtctccctcctttcatggattggatggaatcatttgtg |
4788814 |
T |
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| Q |
207 |
acaatgaatatgacagca |
224 |
Q |
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| T |
4788813 |
acaatgaatatgacagca |
4788796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 4791419 - 4791529
Alignment:
| Q |
114 |
atggaaatgatggagttatgttatcatatatgctacacactctgttttgagttctgcctccctcctttcatggattggatggaatcatttgtcacaatga |
213 |
Q |
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| T |
4791419 |
atggaaatgatggagttgtgttatcatatatgctacacactctgttttgagttctgtctccctcctttcatggattggatggaatcatttgtgacaatga |
4791518 |
T |
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| Q |
214 |
atatgacagca |
224 |
Q |
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| T |
4791519 |
atatgacagca |
4791529 |
T |
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