View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_76 (Length: 279)
Name: NF1107_high_76
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_76 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 41225763 - 41225496
Alignment:
| Q |
1 |
cttcaccctgctaagcatccagatctcacatttgagagaagaatcaacggtcctaacacttagacgaaggttatcgttaaaaacgggatttcttcctcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41225763 |
cttcaccctgctaagcatccagatctcacatttgagagaagaatcgacggtcctaacacttagacgaaggttatcgttaaaaacgggatttcttcctcct |
41225664 |
T |
|
| Q |
101 |
ccattgataatcttggtattgacagaattttcaggatcactagtcaaagaaatcttagcataaacatcttgcttgtggtatatgcagatgttatgaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41225663 |
ccattgataatcttggtattgacagaattttcaggatcactagtcaaagaaatcttagcataaacatcttgcttgtggtatatgcagatcttatgaatgt |
41225564 |
T |
|
| Q |
201 |
ccctagcttgatgtatgtaaacatcaactactccaataaattcctctggattagacactgcaacagct |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41225563 |
ccctagcttgatgtatgtaaacatcaactactccaataaattcctctggattagacactgcaacagct |
41225496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22227616 - 22227392
Alignment:
| Q |
1 |
cttcaccctgctaagcatccagatctcacatttgagagaagaatcaacggtcctaacacttagacgaaggttatcgttaaaaacgggatttcttcctcct |
100 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||| |||||||| || |||| | |||||||| || |||||||| || || || ||||| ||| |
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| T |
22227616 |
cttcaccctgctaagcatccatagctcacatttgagagacgaatcaacatcccaaacattgagacgaagattgtcgttaaacacagggttccttccacct |
22227517 |
T |
|
| Q |
101 |
ccattgataatcttggtattgacagaattttcaggatcactagtcaaagaaatcttagcataaacatcttgcttgtggtatatgcagatgttatgaatgt |
200 |
Q |
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||||| || |||| ||| ||| || || |||| ||| |||| ||||||||||||||||||||||||||||||||||||| || || ||||||| |
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| T |
22227516 |
ccattaatggtcttagtagagacgctgttctccggattacttgtcaggtaaatcttagcataaacatcttgcttgtggtatatgcaaatattctgaatgt |
22227417 |
T |
|
| Q |
201 |
ccctagcttgatgtatgtaaacatc |
225 |
Q |
| |
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||||||| |||||||| |||||||| |
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|
| T |
22227416 |
ccctagcctgatgtatataaacatc |
22227392 |
T |
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