View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_83 (Length: 267)
Name: NF1107_high_83
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_83 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 35956281 - 35956132
Alignment:
| Q |
33 |
ttttcctgatgacttcagtaccaaccatgcgaatttctctctagtgttcttgttcgagacaacaaaaacttcacagtggtcatttcaaatgagtatatct |
132 |
Q |
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| T |
35956281 |
ttttcctgacgacttcagtaccaaccatgcgaatttctctctagcattcttgttcgagacaacaaaaacttcacagtggtcatttcaaatgagtatatct |
35956182 |
T |
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| Q |
133 |
ctagcnnnnnnnnattcttttcttcttgttcaaccgtttaaaatattatt |
182 |
Q |
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| T |
35956181 |
ctagcttttttttatccttttcttcttgttcaaacgtttaaaatactatt |
35956132 |
T |
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