View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_87 (Length: 252)
Name: NF1107_high_87
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_87 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 13139454 - 13139210
Alignment:
| Q |
1 |
caaaaccattcattggagaacctctatagctaatcttatttctagcaccaacctctctggtaataacattcttgcaacttcctcttccagcatgtatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
13139454 |
caaaaccattcattggagaacctctatagctaatcttatttctagcaccaacctctctggtaataatactcttgcaacttcctcttccagcatgtatgat |
13139355 |
T |
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| Q |
101 |
tttactatcatnnnnnnnttcaacatcactttgcatcctcctagggcccctcaaatcatagaggttttatggcaccctcctattctaaactggataaagt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139354 |
tttactatcataaaaaaattcaacatcactttgcatcctcctagggcccctcaaatcatagaggttttatggcaccctcctattctaaactggataaagt |
13139255 |
T |
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| Q |
201 |
gcaattctgatgggtcctcaacctctatctcctccgtctgtggtg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13139254 |
gcaattctgatgggtcctcaacctctatctcctccggctgtggtg |
13139210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 24558154 - 24557910
Alignment:
| Q |
1 |
caaaaccattcattggagaacctctatagctaatcttatttctagcaccaacctctctggtaataacattcttgcaacttcctcttccagcatgtatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
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| T |
24558154 |
caaaaccattcattggagaacctctatagctaatcttatttctagcaccaacctctctggtaataatactcttgcaacttccacttccagcatgtatgat |
24558055 |
T |
|
| Q |
101 |
tttactatcatnnnnnnnttcaacatcactttgcatcctcctagggcccctcaaatcatagaggttttatggcaccctcctattctaaactggataaagt |
200 |
Q |
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| T |
24558054 |
tttactatcataaaaaaattcaacatcactttgcatcctcctagggcccctcaaatcatagaggttttatggcaccctcctattctaaactggataaagt |
24557955 |
T |
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| Q |
201 |
gcaattctgatgggtcctcaacctctatctcctccgtctgtggtg |
245 |
Q |
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| T |
24557954 |
gcaattctgatgggtcatcaacctctatctcctccggctgtggtg |
24557910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 14245773 - 14245685
Alignment:
| Q |
157 |
catagaggttttatggcaccctcctattctaaactggataaagtgcaattctgatgggtcctcaacctctatctcctccgtctgtggtg |
245 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |
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| T |
14245773 |
catagaggttttatggcatcctcctattctaaattggataaagtgcaattctaatgggtcctcaacctctctctcctccggctgtggtg |
14245685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 13142258 - 13142197
Alignment:
| Q |
184 |
tctaaactggataaagtgcaattctgatgggtcctcaacctctatctcctccgtctgtggtg |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
13142258 |
tctaaactggataaagtgcaattctgatgggtcctcaacctctctctcctccggctgtggtg |
13142197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 13142329 - 13142257
Alignment:
| Q |
80 |
tcctcttccagcatgtatgattttactatcatnnnnnnnttcaacatcactttgcatcctcctagggcccctc |
152 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13142329 |
tcctcttcctgcatgtatgattttactatcataaaaaaattcaacatcactttgcatcctcctagggcccctc |
13142257 |
T |
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