View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_91 (Length: 251)
Name: NF1107_high_91
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_91 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 29729280 - 29729501
Alignment:
| Q |
30 |
tgaacaaagcatacaaacataccattcaacttatagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcacca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729280 |
tgaacaaagcatacaaacataccattcaacttatagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcacca |
29729379 |
T |
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| Q |
130 |
agatgacttgctccaagtcttgggtccgcgaccctcccccttcaagagtgctgaactatgaccaatttaagctaggggttcaagatgaggagacagatgt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729380 |
agatgacttgctccaagtcttgggtccgcgaccctcccccttcaagagtgctgaactatgaccaatttaagctaggggttcaagatgaggagacagatgt |
29729479 |
T |
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| Q |
230 |
cgaaaaaattgttcatggaacc |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
29729480 |
cgaaaaaattgttcatggaacc |
29729501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 38513088 - 38513004
Alignment:
| Q |
80 |
aaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcaccaagatgacttgctccaagtcttgggtccgcgaccct |
164 |
Q |
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| T |
38513088 |
aaagtagctcaacttgcagagttgcttcttgaaaaagaagttcttcaccaagatgacttgcttccaatcttgggtgtgcgaccct |
38513004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 16849908 - 16850096
Alignment:
| Q |
30 |
tgaacaaagcatacaaacataccattcaacttatagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcacca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16849908 |
tgaacaaagcatacaaacataccattcaacttatagaagaacacaagggaaaagtagctgaaattgcagagttattgctcgaaaaagaagtacttcacca |
16850007 |
T |
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| Q |
130 |
agatgacttgctccaagtcttgggtccgcgaccctcccccttcaagagtgctgaactatgaccaatttaagctaggggttcaagatgag |
218 |
Q |
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| T |
16850008 |
agatgacttgctccaagtcttgggtccgcgaccctcccccttcaagaatgctgaactatgatcaatttaagctaggggttcaagatgag |
16850096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 3807 - 3936
Alignment:
| Q |
30 |
tgaacaaagcatacaaacataccattcaacttatagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcacca |
129 |
Q |
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|||||||||||| ||||||||| || ||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
3807 |
tgaacaaagcattcaaacatactatacaactaatagaggaacacaagggaaaagtagctgaaattgcagagttgctgctcgaaaaagaagtactatacca |
3906 |
T |
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| Q |
130 |
agatgacttgctccaagtcttgggtccgcg |
159 |
Q |
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| T |
3907 |
agacgacttgctccaagtcttgggtgcgcg |
3936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 45285569 - 45285722
Alignment:
| Q |
30 |
tgaacaaagcatacaaacataccattcaacttatagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcacca |
129 |
Q |
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||||||||||||||||||||||||| || |||||||| ||| |||||| ||| | |||||||||||| || | ||||||||||||||||||||||||| |
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| T |
45285569 |
tgaacaaagcatacaaacataccatacagcttatagaggaatacaaggggaaattggctgaaattgcaaagctgttgctcgaaaaagaagtacttcacca |
45285668 |
T |
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| Q |
130 |
agatgacttgctccaagtcttgggtccgcgaccctcccccttcaagagtgctgaact |
186 |
Q |
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||||||||||||||||||||||||| || ||| |||||||||||||||||||| |
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| T |
45285669 |
agatgacttgctccaagtcttgggtgcgtgac---tacccttcaagagtgctgaact |
45285722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 20477657 - 20477441
Alignment:
| Q |
30 |
tgaacaaagcatacaaacataccattcaacttatagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcacca |
129 |
Q |
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|||| |||||||||||||||||||| | |||||||| ||| |||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
20477657 |
tgaagaaagcatacaaacataccatagagcttatagaggaatacaaggggaaagtagctgaagttgcagagttgctgctcgaaaaagaagtacttcacca |
20477558 |
T |
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| Q |
130 |
agatgacttgctccaagtcttgggtccgcgaccctcccccttcaagagtgctgaac--------tatgaccaatttaagctaggggttcaagatgaggag |
221 |
Q |
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|||||| ||||| ||||||||||| ||||| ||||||||||||||||||| ||||| || ||||||||||| |||||||||||| | |
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| T |
20477557 |
agatgaattgcttaaagtcttgggtgtgcgac---tacccttcaagagtgctgaacatgataattatgatcagattaagctagggattcaagatgaggcg |
20477461 |
T |
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| Q |
222 |
acagatgtcgaaaaaattgt |
241 |
Q |
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| |||||| |||| |||||| |
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| T |
20477460 |
aaagatgtagaaataattgt |
20477441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 24005637 - 24005742
Alignment:
| Q |
59 |
cttatagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcaccaagatgacttgctccaagtcttgggtccgc |
158 |
Q |
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||||||||||||| ||||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| | | | |||||||| || |
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| T |
24005637 |
cttatagaagaacacaaggagaaactagctcaaattgcagagttacttctcgaaaaagaagtacttcaccaagaggacttggttcgaatcttgggtgagc |
24005736 |
T |
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| Q |
159 |
gaccct |
164 |
Q |
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|||||| |
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| T |
24005737 |
gaccct |
24005742 |
T |
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