View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_93 (Length: 251)
Name: NF1107_high_93
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_93 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 9711797 - 9711602
Alignment:
| Q |
27 |
tagacattgatcattacttaagagtatgacactagttaaaggcctcttattctcctatttccatgccattattgactaactatttctccaaaaaagagag |
126 |
Q |
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| T |
9711797 |
tagacattgatcattacttaagagtatgacactagttaaaggcctcttattctcctatttccatgccattattgactaactacttctccaaaaaagagag |
9711698 |
T |
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| Q |
127 |
gacaga-aaaacacatgaacctatgatttttgcaataagaaataataaccatgcatgcatacatatgcaatgaaacagaaagcgtgcacgacatattt |
223 |
Q |
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| T |
9711697 |
gacagaaaaaacacatgaacctatgatttttgcaataagaaataataaccatgcatgcatac--atgcaatgaaatagaaagtgtgcacgacatattt |
9711602 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 25706105 - 25706071
Alignment:
| Q |
32 |
attgatcattacttaagagtatgacactagttaaa |
66 |
Q |
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| T |
25706105 |
attgatcattacttaagagtatgacactagttaaa |
25706071 |
T |
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