View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_high_99 (Length: 247)
Name: NF1107_high_99
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_high_99 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 9453007 - 9452810
Alignment:
| Q |
35 |
tgttgctcttttaagatgaagcggtgaattcattaaatataagatccaatggatggtgtgttgtcaactcattctggaagcttttgtgaaaaatcctctc |
134 |
Q |
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| T |
9453007 |
tgttgctcttttaagatgaagcggtaaattcattaaatataagatctaatggatggtgtgttgccatctcattctagaagctttcgtgaaaaatcctctc |
9452908 |
T |
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| Q |
135 |
gcggtatctagcatttttcttataaaatatctttgccatctcaaattgtt-ttttgacaaagttttatttatctaaccaaatctaatttatgtactat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9452907 |
gcggtatctagcatttttcttataaaatatctttgccatctcaaattgtttttttgacaaagttttatttttctaaccaaatctaatttatgtactat |
9452810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 46424194 - 46424083
Alignment:
| Q |
35 |
tgttgctcttttaagatgaagcggtgaattcattaaatataagatccaatggatggtgtgttgtcaactcattctggaagcttttgtgaaaaatcctctc |
134 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
46424194 |
tgttgctcttttaagatgaagcgatgaattcattaaatataagatccaatggatggtgtgttgtcaactcat-------gctttcgtgaaaaaccctctt |
46424102 |
T |
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| Q |
135 |
gcggtatctagcatttttc |
153 |
Q |
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|| |||||||||||||||| |
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| T |
46424101 |
gctgtatctagcatttttc |
46424083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 21546588 - 21546665
Alignment:
| Q |
154 |
ttataaaatatctttgccatctcaaattgttttttgacaaagttttatttatctaaccaaatctaatttatgtactat |
231 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21546588 |
ttataaaatatctttgtcatatcaaattgttttttgacaaagttttatttatctaaccaaatctaatttatgtactat |
21546665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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