View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_low_10 (Length: 508)

Name: NF1107_low_10
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_low_10
NF1107_low_10
[»] chr6 (25 HSPs)
chr6 (30-505)||(7132088-7132563)
chr6 (30-380)||(7135136-7135486)
chr6 (139-380)||(7138059-7138300)
chr6 (230-483)||(6423710-6423963)
chr6 (223-446)||(6427023-6427246)
chr6 (77-373)||(19633012-19633314)
chr6 (184-451)||(8913372-8913639)
chr6 (95-492)||(7993412-7993797)
chr6 (191-288)||(6417092-6417189)
chr6 (31-120)||(6593730-6593819)
chr6 (235-357)||(6596238-6596360)
chr6 (233-359)||(10579099-10579225)
chr6 (413-504)||(6594139-6594230)
chr6 (389-491)||(6403366-6403468)
chr6 (218-450)||(6410532-6410765)
chr6 (219-279)||(14809708-14809768)
chr6 (34-128)||(14821544-14821638)
chr6 (186-269)||(9412143-9412223)
chr6 (220-269)||(28935357-28935406)
chr6 (221-288)||(6593920-6593987)
chr6 (233-279)||(6395546-6395592)
chr6 (370-444)||(10579302-10579376)
chr6 (232-288)||(6403578-6403634)
chr6 (66-158)||(6602562-6602654)
chr6 (219-279)||(14821393-14821453)
[»] chr7 (3 HSPs)
chr7 (137-288)||(10615713-10615864)
chr7 (184-288)||(10169002-10169106)
chr7 (184-288)||(10176527-10176631)
[»] chr1 (6 HSPs)
chr1 (163-279)||(19467362-19467478)
chr1 (323-504)||(33160979-33161160)
chr1 (208-290)||(7555196-7555278)
chr1 (39-128)||(33161355-33161444)
chr1 (221-279)||(33161207-33161265)
chr1 (432-505)||(30827569-30827642)
[»] chr4 (16 HSPs)
chr4 (219-279)||(553768-553828)
chr4 (239-288)||(571330-571379)
chr4 (65-290)||(21833110-21833335)
chr4 (141-262)||(53760205-53760323)
chr4 (206-279)||(661867-661940)
chr4 (206-279)||(1755562-1755635)
chr4 (247-279)||(1547718-1547750)
chr4 (242-290)||(3437630-3437678)
chr4 (187-257)||(532773-532843)
chr4 (100-146)||(532878-532924)
chr4 (206-272)||(8186333-8186399)
chr4 (226-271)||(1545881-1545926)
chr4 (41-126)||(1546023-1546108)
chr4 (65-122)||(1552354-1552411)
chr4 (413-450)||(3438186-3438223)
chr4 (241-290)||(55907684-55907733)
[»] chr3 (3 HSPs)
chr3 (162-288)||(51763323-51763446)
chr3 (191-288)||(13469608-13469705)
chr3 (230-279)||(1657536-1657585)
[»] chr8 (8 HSPs)
chr8 (186-272)||(5766559-5766645)
chr8 (100-288)||(17642806-17642991)
chr8 (187-272)||(14004159-14004244)
chr8 (239-288)||(21236154-21236203)
chr8 (208-288)||(17635632-17635712)
chr8 (243-279)||(32151977-32152013)
chr8 (230-279)||(28246056-28246105)
chr8 (231-276)||(34935986-34936031)
[»] chr5 (3 HSPs)
chr5 (40-136)||(17205870-17205966)
chr5 (229-272)||(28532829-28532872)
chr5 (222-278)||(28661184-28661240)
[»] scaffold1155 (1 HSPs)
scaffold1155 (96-271)||(1753-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (96-271)||(8291-8463)
[»] scaffold0105 (1 HSPs)
scaffold0105 (96-271)||(30516-30688)
[»] chr2 (1 HSPs)
chr2 (241-290)||(1036620-1036669)


Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 30 - 505
Target Start/End: Complemental strand, 7132563 - 7132088
Alignment:
Q  30 cgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctca 129  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132563 cgaccgtcgtcgattctcactcatcgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctca 7132464  T
Q  130 aactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7132463 aactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctg 7132364  T
Q  230 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccga 329  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  7132363 caaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacatgtttctctacaacaacgatctgttacttattgccga 7132264  T
Q  330 ttgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcga 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7132263 ttgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaactaacttcattaatggaattcactgtatgttatccaagtggcga 7132164  T
Q  430 tgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgcctttgcttcttc 505  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  7132163 tgtatacaacatttgaatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgtcttggtttcttc 7132088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 380
Target Start/End: Complemental strand, 7135486 - 7135136
Alignment:
Q  30 cgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctca 129  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135486 cgaccgtcgtcgattctcactcatcgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctca 7135387  T
Q  130 aactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctg 229  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7135386 aactacaacgatgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctg 7135287  T
Q  230 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccga 329  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  7135286 caaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtgtctctacaacaacgatctgttacttattgccga 7135187  T
Q  330 ttgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaa 380  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||| ||||    
T  7135186 ttgttttccaatgcacaaagaactcaaccttggtcaccttttggtgcacaa 7135136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 139 - 380
Target Start/End: Complemental strand, 7138300 - 7138059
Alignment:
Q  139 ggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggt 238  Q
    |||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7138300 ggtgacctcgacatacttctccgcaaaatctctcatttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggt 7138201  T
Q  239 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttcc 338  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7138200 tgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtttctctacaacaacgatctgttacttattgccgattgttttcc 7138101  T
Q  339 aatgcttaaagaactcaaccttggtcaccctttggtgaacaa 380  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  7138100 aatgcttaaagaactcaaccttggtcaccttttggtgcacaa 7138059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 230 - 483
Target Start/End: Complemental strand, 6423963 - 6423710
Alignment:
Q  230 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccga 329  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||||  |  | |||||||| ||||| ||| ||||||||| | ||| |    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgttatagcatgtttctctccaacaccgacctgttacttgtggccaa 6423864  T
Q  330 ttgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcga 429  Q
    |||||| ||| |||| ||||||||||||||    | ||||||||| | | || |||| || |||||||||||||||| |  | ||||||||||||| | |    
T  6423863 ttgtttcccattgctcaaagaactcaacctcaaacgccctttggtcatcgatgaaactaatttcattaatggaattcgcaatttgttatccaagtgtcaa 6423764  T
Q  430 tgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtt 483  Q
    ||||||||||||||| |||||   ||||  ||||||||||| ||| ||||||||    
T  6423763 tgtatacaacatttgaatcttgactgcatttattttctgaaggatcaacatgtt 6423710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 223 - 446
Target Start/End: Complemental strand, 6427246 - 6427023
Alignment:
Q  223 tttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttactta 322  Q
    ||||||| ||| ||||||| || |||||||||||| |||||||||||||| | ||||  ||||| |  ||| ||| |||  ||||||||||||| ||  |    
T  6427246 tttcctgtaaacgggttgcaagttttctcccaaaatattacaactttgacctttctcacttgttacggtacttttttctgtaacaacgatctgtcaccca 6427147  T
Q  323 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 422  Q
    |||  |||||||| ||  |||| ||| ||||||||||   |||||||||||| | |||| |  | ||||||||||||  |||||||||||||||||||||    
T  6427146 ttgttgattgtttccctttgctcaaacaactcaacctccatcaccctttggtcatcaataagcctaacttcattaattcaattcactgtatgttatccaa 6427047  T
Q  423 gtggcgatgtatacaacatttgga 446  Q
    ||| | ||||||||||||||||||    
T  6427046 gtgtccatgtatacaacatttgga 6427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 373
Target Start/End: Complemental strand, 19633314 - 19633012
Alignment:
Q  77 tcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctccttt 176  Q
    |||||||||||||  ||| |||||| |||||||||| |||||| ||||||||| | | ||||  |||  |  ||   ||||| |  |||||||||| ||     
T  19633314 tcctcggtcgcctattcagaaggtttaccaacctcatctccctcgacctctcacaattcaaccatgatgtcaaccaccttctgcgtaaaatctctcgtta 19633215  T
Q  177 cccactaaagaaactcacatcccttagtatctc---caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgaca 273  Q
    |||| | |||||||||||||| ||| |||||||   |||||||  | |||||||  ||||||||||||||||||||||| ||| |||||||||||||||     
T  19633214 cccattgaagaaactcacatctctttgtatctctagcaaccaattcccctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacc 19633115  T
Q  274 tctctcgattgttccaatacgtttctctacaacaacgatctgttact---tattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctt 370  Q
    ||||||  |||  |  | | |||||||||||||||||| ||||||||    |||||||||||||| ||| || | |||||||||||||| | | ||||||    
T  19633114 tctctcacttgcactcacatgtttctctacaacaacgaactgttactcaacattgccgattgtttcccattgttgaaagaactcaacctcgcttaccctt 19633015  T
Q  371 tgg 373  Q
    |||    
T  19633014 tgg 19633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 184 - 451
Target Start/End: Original strand, 8913372 - 8913639
Alignment:
Q  184 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 283  Q
    |||||||||||||| || | |||||||||||||   ||||||||||| |||||||||| || ||| ||  |||| |||||||||||||| |||||| |||    
T  8913372 aagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaatt 8913471  T
Q  284 gttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatca 383  Q
    ||||||| | ||||||  | |||||| | |||||| |  |||  | |||||| ||  |||||||||||||||||||| ||||| | ||||| ||| ||||    
T  8913472 gttccaacatgtttcttgataacaacaaactgttattcgttgttggttgtttccctttgcttaaagaactcaaccttagtcacaccttggtcaactatca 8913571  T
Q  384 aacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatctta 451  Q
     |  ||  || |||||  |||||||  | ||||||||||||| | |||| |||||||||||| |||||    
T  8913572 cagtaatgtctttaattaaattcaccatttgttatccaagtgtcaatgtttacaacatttggttctta 8913639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 492
Target Start/End: Original strand, 7993412 - 7993797
Alignment:
Q  95 aaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcac 194  Q
    |||| ||||| ||||| ||||||||  ||||||| |||||| |  |||||||||||| | |||| |   |||||||| ||||||||  |  |||  ||||    
T  7993412 aaagattcactaaccttaactccctcaacctctcgaactaccattgtgaccttgacaagtttctgcgggaaatctctactttcccatcattgaacatcac 7993511  T
Q  195 atcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacg 294  Q
    |||||||| ||||||| |||||  || |||||| ||  |||| |||||||| ||  ||||||||||||||| |||||| |||||| |||||||||||||     
T  7993512 atcccttaatatctccgaccaatgcaactttcccgcctatggtttgcgagcatttgcccaaaacattacaattttgacctctctcaattgttccaatact 7993611  T
Q  295 tttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttca 394  Q
    |||||    ||   ||  |||||||| |||||| ||||||| ||  |||| |||||||||||||| ||||            ||||| | || | || ||    
T  7993612 tttcttggtaagggcggcctgttactcattgccaattgtttccctttgctcaaagaactcaacctcggtc------------acaatgacactagctaca 7993699  T
Q  395 ttaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttg 492  Q
    |||||| | |||||| | |||| |||||||| ||||||||||||||||| |||||||   | |  |||||||||||||||  ||||||| ||||||||    
T  7993700 ttaatgaatttcactatttgttgtccaagtgtcgatgtatacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagttg 7993797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 288
Target Start/End: Complemental strand, 6417189 - 6417092
Alignment:
Q  191 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 288  Q
    ||||||| |||| |||||||||||||| ||| ||||| | ||||||||| ||||||||||||||||| | |||||||||||| ||||||  |||||||    
T  6417189 tcacatcacttaatatctccaaccaacccacttttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 6593730 - 6593819
Alignment:
Q  31 gaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactccctt 120  Q
    |||||||  ||||||||| || |||||||| ||| ||||  |||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  6593730 gaccgtctccgattctcaatctttgtcaaaaatggaacactccctttcctcggtcgcctcctcgaaaggttcaccaacctcaaatccctt 6593819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 357
Target Start/End: Original strand, 6596238 - 6596360
Alignment:
Q  235 gggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgtt 334  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||  |||||| |  |  ||||||||||| || ||  ||||||| ||||| |||||||    
T  6596238 gggttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctataaactttctctacaaaaatgacttgttactcattgctgattgtt 6596337  T
Q  335 ttccaatgcttaaagaactcaac 357  Q
    | ||| |||| ||||||||||||    
T  6596338 tcccattgctcaaagaactcaac 6596360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 359
Target Start/End: Original strand, 10579099 - 10579225
Alignment:
Q  233 atgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattg 332  Q
    ||||||| |||||||||||||||||||| ||||||||||||  | ||  |||||| | |   ||||||||||| || ||  |||||||  ||||||||||    
T  10579099 atgggttacgagctttctcccaaaacataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgattg 10579198  T
Q  333 ttttccaatgcttaaagaactcaacct 359  Q
    ||| ||| |||| ||||||||||||||    
T  10579199 tttcccattgctcaaagaactcaacct 10579225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 504
Target Start/End: Original strand, 6594139 - 6594230
Alignment:
Q  413 tgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgcctttgcttctt 504  Q
    ||||||||||||| |||||||||||||||||| |||||| || | |   ||||||||||||| |||||||| | |||||| ||||| |||||    
T  6594139 tgttatccaagtgtcgatgtatacaacatttgaatcttaagtacgctcgttttctgaatgatcaacatgttgccgagttgtctttgtttctt 6594230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 491
Target Start/End: Complemental strand, 6403468 - 6403366
Alignment:
Q  389 acttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctga 488  Q
    |||| |||||||||||  ||| | |||||||||||||  ||||||||||||||||||||||||    ||  |||||||||||||||  ||||||| ||||    
T  6403468 actttattaatggaatatactctctgttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctga 6403369  T
Q  489 gtt 491  Q
    |||    
T  6403368 gtt 6403366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 450
Target Start/End: Complemental strand, 6410765 - 6410532
Alignment:
Q  218 acacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgtt 317  Q
    ||||||||||   ||||||||||| || ||||||||||||||||||||||||||| ||| ||  |||  || |   |||  |  | |||||| | ||| |    
T  6410765 acacctttcccataaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttgcccctacgtgttatttgataacaacaacctgat 6410666  T
Q  318 acttattgccgattgttttccaatgcttaaagaactcaa-ccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgtt 416  Q
    |||  |||| |||||||| ||| |||| ||||||||||| |||   |||||||| | | ||  ||| | | || ||||||||||||||||||| | ||||    
T  6410665 actctttgctgattgtttcccattgctcaaagaactcaaacctcattcacccttcgttcaagtatcgatctaatttcattaatggaattcactatctgtt 6410566  T
Q  417 atccaagtggcgatgtatacaacatttggatctt 450  Q
    ||||||||| | |||| |||||||| ||||||||    
T  6410565 atccaagtgccaatgtttacaacatatggatctt 6410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 14809768 - 14809708
Alignment:
Q  219 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 279  Q
    ||||||||| ||||| ||||||| || ||||||||||||||||||||||||| | ||||||    
T  14809768 cacctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttggcctctctc 14809708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 14821638 - 14821544
Alignment:
Q  34 cgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctc 128  Q
    |||| |||||| ||||| | | ||||||| |||||| |||||||||||  |   ||| ||||||||||||||||||||| |||||||||| ||||    
T  14821638 cgtcttcgattttcacttaatatcaaagaggcaacacgccctttcctcttttctctcttcaaaaggttcaccaacctcacctcccttgacttctc 14821544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 269
Target Start/End: Complemental strand, 9412223 - 9412143
Alignment:
Q  186 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 269  Q
    ||||||| |||| |||| | |||||||||| | |||| |||| ||   |||||||||||||||||||||||| |||||||||||    
T  9412223 gaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaacttt 9412143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 28935406 - 28935357
Alignment:
Q  220 acctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 269  Q
    ||||||||  |||| ||||||||||| |||||||||||||||||||||||    
T  28935406 acctttcccacaaaagggttgcgagccttctcccaaaacattacaacttt 28935357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 6593920 - 6593987
Alignment:
Q  221 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 288  Q
    |||||||  ||||||| ||||||| |||||| ||||| |||||||||||||| ||| || ||||||||    
T  6593920 cctttccctcaaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 6395592 - 6395546
Alignment:
Q  233 atgggttgcgagctttctcccaaaacattacaactttgacatctctc 279  Q
    ||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  6395592 atgggttgcaagctctctcccaaaatattacaactttgacctctctc 6395546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 10579302 - 10579376
Alignment:
Q  370 ttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttg 444  Q
    ||||| ||||||| |||  | ||||||||||||||||||| | ||||||| ||||| | |||||| |||||||||    
T  10579302 ttggtcaacaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttg 10579376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 6403634 - 6403578
Alignment:
Q  232 aatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 288  Q
    |||||||||||||||||||||| |||  | || |||||||| ||||| |||||||||    
T  6403634 aatgggttgcgagctttctcccgaaaggtcactactttgacctctcttgattgttcc 6403578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 6602562 - 6602654
Alignment:
Q  66 aacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttct 158  Q
    |||| ||||||| || | ||||||| | |||||||||||  ||||||| ||||| ||| ||||| | ||| || ||||||| |||||||||||    
T  6602562 aacacgcccttttcttgatcgcctctttaaaaggttcacatacctcaattccctcgacatctcagaatacgacagtgacctggacatgcttct 6602654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 14821453 - 14821393
Alignment:
Q  219 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 279  Q
    ||||||||| ||||||||||||||  ||||||| |  ||| ||||||||||||| ||||||    
T  14821453 cacctttcccgcaaatgggttgcggactttctcacgtaacgttacaactttgacctctctc 14821393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 288
Target Start/End: Complemental strand, 10615864 - 10615713
Alignment:
Q  137 acggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgg 236  Q
    ||||||||||||||   ||||||| ||||||||||| |||||||  |  |||  ||||||| |||| ||| |||||||||| |||  |||| ||||||||    
T  10615864 acggtgaccttgacgctcttctccgcaaaatctctcgtttcccatcattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgg 10615765  T
Q  237 gttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 288  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||  |||||||    
T  10615764 gttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 10169002 - 10169106
Alignment:
Q  184 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 283  Q
    |||||||||||||| ||   ||| ||| |||||  |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  ||    
T  10169002 aagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcactt 10169101  T
Q  284 gttcc 288  Q
    |||||    
T  10169102 gttcc 10169106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 10176527 - 10176631
Alignment:
Q  184 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 283  Q
    |||||||||||||| ||   ||| ||| |||||  |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  ||    
T  10176527 aagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcactt 10176626  T
Q  284 gttcc 288  Q
    |||||    
T  10176627 gttcc 10176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 279
Target Start/End: Original strand, 19467362 - 19467478
Alignment:
Q  163 aaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacatta 262  Q
    |||||||||| ||||||| | || ||||||||||| || | ||||||||||  ||||||| |||| |||||||||||||||| |||| | ||||| ||||    
T  19467362 aaaatctctcatttcccattgaaaaaactcacatctctcattatctccaacagacacaccattcccgcaaatgggttgcgagttttcactcaaaatatta 19467461  T
Q  263 caactttgacatctctc 279  Q
    |||||||||| ||||||    
T  19467462 caactttgacctctctc 19467478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 504
Target Start/End: Complemental strand, 33161160 - 33160979
Alignment:
Q  323 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 422  Q
    ||||||||||||| ||  |||| ||| |||||||||| |||||||||  | | |||||||| || ||||||||||||||| |||||| | | ||||||||    
T  33161160 ttgccgattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatccaa 33161061  T
Q  423 gtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgcctttgcttctt 504  Q
     || | || ||||||| |||||||||| |    ||| ||||||||||||||| |||||||| | |||||  ||||| |||||    
T  33161060 ctgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgttgccgagttctctttgtttctt 33160979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 7555278 - 7555196
Alignment:
Q  208 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 290  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| ||||||||||| || || |||  |||||||||    
T  7555278 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 33161444 - 33161355
Alignment:
Q  39 tcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctc 128  Q
    ||||||||||||||   ||||| |  |||||  ||||||||||  ||| ||| | ||||||||||||||||||| |||||||||||||||    
T  33161444 tcgattctcactcaccctcaaaaactcaacacaccctttcctccctcgtctcttgaaaaggttcaccaacctcacctcccttgacctctc 33161355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 33161265 - 33161207
Alignment:
Q  221 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 279  Q
    ||||||| || ||||| |||||| |||||||||||| ||||| ||||||||| ||||||    
T  33161265 cctttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctc 33161207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 505
Target Start/End: Complemental strand, 30827642 - 30827569
Alignment:
Q  432 tatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgcctttgcttcttc 505  Q
    ||||||||||||||||||||| | ||| | |||||| |||||| |||||||| | || ||  ||||||||||||    
T  30827642 tatacaacatttggatcttagtttcacttgttttctcaatgatcaacatgttgccgacttctctttgcttcttc 30827569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 553828 - 553768
Alignment:
Q  219 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 279  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  553828 caccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctc 553768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 571379 - 571330
Alignment:
Q  239 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 288  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 571330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 290
Target Start/End: Original strand, 21833110 - 21833335
Alignment:
Q  65 caacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaa 164  Q
    ||||| ||||| || || ||| |||| ||||||| ||||||||||| | ||||||| |||||||   || | ||||||||||  |||  |||||||   |    
T  21833110 caacacgccctctcatccgtcccctcttcaaaagattcaccaaccttacctcccttaacctctctcgcttccacggtgacctcaacaaccttctccgtca 21833209  T
Q  165 aatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattaca 264  Q
    |||||||| |||||||  |  |||  |||  || || | |||||||||| ||| |||| |||| ||| |||||||||||| |||  | |||||||||||     
T  21833210 aatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattact 21833309  T
Q  265 actttgacatctctcgattgttccaa 290  Q
    |||||||| ||||||  |||||||||    
T  21833310 actttgacctctctcacttgttccaa 21833335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 53760205 - 53760323
Alignment:
Q  141 tgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttg 240  Q
    ||||||||||| | |||| | || |||||||| ||||||| |   |||||||||||| || | | |||||||||||  |||  | | |||||||||||||    
T  53760205 tgaccttgacaaggttcttcgcagaatctctcgtttcccatt---gaaactcacatcactcaatctctccaaccaatccactatccatgcaaatgggttg 53760301  T
Q  241 cgagctttctcccaaaacatta 262  Q
    |||||||||| |||||||||||    
T  53760302 cgagctttcttccaaaacatta 53760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 661940 - 661867
Alignment:
Q  206 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 279  Q
    |||||||||||  |||| |||| || ||||| |||||||||||||||||| | ||||||||||| || ||||||    
T  661940 tctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctc 661867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 1755635 - 1755562
Alignment:
Q  206 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 279  Q
    |||||||||||||| || ||||  | || ||||||| ||||||||| ||||| |||||||||||||| ||||||    
T  1755635 tctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaactttgacctctctc 1755562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 1547718 - 1547750
Alignment:
Q  247 ttctcccaaaacattacaactttgacatctctc 279  Q
    |||||||||||||||||||||||||||||||||    
T  1547718 ttctcccaaaacattacaactttgacatctctc 1547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 3437630 - 3437678
Alignment:
Q  242 gagctttctcccaaaacattacaactttgacatctctcgattgttccaa 290  Q
    |||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 532843 - 532773
Alignment:
Q  187 aaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaa 257  Q
    ||||||||||| || | | |||| |||||||||||| |||| ||||||||||| ||||| |||||| ||||    
T  532843 aaactcacatcactcaatctctctaaccaacacaccattcccgcaaatgggttacgagccttctccaaaaa 532773  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 532924 - 532878
Alignment:
Q  100 ttcaccaacctcaactcccttgacctctcaaactacaacggtgacct 146  Q
    ||||||||||||| ||||||||||||  ||| |||||||||||||||    
T  532924 ttcaccaacctcacctcccttgaccttacaagctacaacggtgacct 532878  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 8186333 - 8186399
Alignment:
Q  206 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 272  Q
    |||| ||| ||| |||| ||||||||||||| ||||||| | |||||| ||| ||||||||||||||    
T  8186333 tctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgac 8186399  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 1545926 - 1545881
Alignment:
Q  226 cctgcaaatgggttgcgagctttctcccaaaacattacaactttga 271  Q
    ||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  1545926 cctgccaatgggttgcgatctttctctcaaaatattacaactttga 1545881  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 1546108 - 1546023
Alignment:
Q  41 gattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctc 126  Q
    |||| ||||||||| ||| | || ||||| ||||||| ||   | ||||||||||||||||||||| ||||| ||||||| |||||    
T  1546108 gattgtcactcattatcagaaattcaacacgcccttttcttcattgcctcctcaaaaggttcaccagcctcacctcccttaacctc 1546023  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 1552354 - 1552411
Alignment:
Q  65 caacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttga 122  Q
    ||||| ||||||||||| | | |||  ||||||||||| |||||||||||||||||||    
T  1552354 caacacgccctttcctccgccaccttttcaaaaggttctccaacctcaactcccttga 1552411  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 450
Target Start/End: Original strand, 3438186 - 3438223
Alignment:
Q  413 tgttatccaagtggcgatgtatacaacatttggatctt 450  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatctt 3438223  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 55907684 - 55907733
Alignment:
Q  241 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 290  Q
    ||||||||||||||||| |||||||||||||  ||||||  |||||||||    
T  55907684 cgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T

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Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 51763323 - 51763446
Alignment:
Q  162 caaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacatt 261  Q
    ||||||||||| ||||||| |   |||||||||||| |||| | ||||||| || |  ||||||||| ||||||||||||||| ||| || ||||| |||    
T  51763323 caaaatctctcgtttcccatt---gaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagatt 51763419  T
Q  262 acaactttgacatctctcgattgttcc 288  Q
    ||||||||||||||||||  |||||||    
T  51763420 acaactttgacatctctcacttgttcc 51763446  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 288
Target Start/End: Original strand, 13469608 - 13469705
Alignment:
Q  191 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 288  Q
    ||||||| |||| | |||||||||||| |||  |||||||||||||||| ||||||||||||||||| | ||||||  |||| ||||||  |||||||    
T  13469608 tcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcc 13469705  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 1657585 - 1657536
Alignment:
Q  230 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 279  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  1657585 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 1657536  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 5766559 - 5766645
Alignment:
Q  186 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 272  Q
    |||||||||||| || | | | |||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  5766559 gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 5766645  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 288
Target Start/End: Original strand, 17642806 - 17642991
Alignment:
Q  100 ttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatccc 199  Q
    ||||||| ||||  |||||| ||||| ||| ||||||| ||||||||  ||| |||| || |||| ||||||  ||| ||| |   |||||||||||| |    
T  17642806 ttcaccagcctcgcctccctcgacctttcacactacaaaggtgacctaaacaagcttatcaacaagatctcttgttttccatt---gaaactcacatcac 17642902  T
Q  200 ttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 288  Q
    | | | |||||||||| | |||| ||||  | |||||||| | |||||||||||| || |||||||||||||| ||||||  |||||||    
T  17642903 tcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgttcc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 14004244 - 14004159
Alignment:
Q  187 aaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 272  Q
    ||||||||||| || | | | |||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  14004244 aaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 14004159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 21236203 - 21236154
Alignment:
Q  239 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 288  Q
    ||||||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  21236203 tgcgagcattctcccaaaatactacaactttgacatctctcaattgttcc 21236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 17635632 - 17635712
Alignment:
Q  208 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 288  Q
    |||||||||| |||| ||||  | |||||||| |||||||||||||  || |||||||||||||| ||||||  |||||||    
T  17635632 tccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgttcc 17635712  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 32152013 - 32151977
Alignment:
Q  243 agctttctcccaaaacattacaactttgacatctctc 279  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctc 32151977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 28246056 - 28246105
Alignment:
Q  230 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 279  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  28246056 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 28246105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 34935986 - 34936031
Alignment:
Q  231 aaatgggttgcgagctttctcccaaaacattacaactttgacatct 276  Q
    |||||| ||||||| |||||| ||||| ||||||||||||||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatct 34936031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 17205966 - 17205870
Alignment:
Q  40 cgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactaca 136  Q
    ||||||||||||| |||| | |||  ||||  ||||||| | |||| |||| |||||||||||||||||||||  ||||||||| ||||| ||||||    
T  17205966 cgattctcactcactgtctatgatcaaacacaccctttctttggtcacctcttcaaaaggttcaccaacctcacatcccttgacttctcacactaca 17205870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 28532872 - 28532829
Alignment:
Q  229 gcaaatgggttgcgagctttctcccaaaacattacaactttgac 272  Q
    |||||||| ||||||||||| || ||||||||||||||||||||    
T  28532872 gcaaatggattgcgagctttttcacaaaacattacaactttgac 28532829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 28661184 - 28661240
Alignment:
Q  222 ctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctct 278  Q
    |||||| ||| |||| ||| ||||||||  ||||||||||||||||||||| |||||    
T  28661184 ctttcccgcacatggtttgggagctttcagccaaaacattacaactttgacctctct 28661240  T

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Target: scaffold1155 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 271
Target Start/End: Original strand, 1753 - 1925
Alignment:
Q  96 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 195  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  1753 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 1849  T
Q  196 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 271  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  1850 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 8463 - 8291
Alignment:
Q  96 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 195  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  8463 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 8367  T
Q  196 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 271  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  8366 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 271
Target Start/End: Original strand, 30516 - 30688
Alignment:
Q  96 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 195  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  30516 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 30612  T
Q  196 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 271  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  30613 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 30688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 1036620 - 1036669
Alignment:
Q  241 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 290  Q
    ||||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  1036620 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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