View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_104 (Length: 280)
Name: NF1107_low_104
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_104 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: scaffold0066 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 22116 - 22315
Alignment:
| Q |
38 |
ccctagctgttgctgactgatgtaaagatctccgtggaagcaaaggagaaatatttaccggtgggggcaatatgcctacatgatcattgaaacctggaac |
137 |
Q |
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| T |
22116 |
ccctagatgttgcggactgatgtaaagatcttcgtggaagcaaaggagaaatatttaccggtgggggcaatatgcctacatgatcattgaaacctggaac |
22215 |
T |
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| Q |
138 |
cggaacagagccaaaaattggaattgtggacggattaaatggtggtgcagaagctgaaagtttcttggttggttcttttccggtttctatttcttctttc |
237 |
Q |
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| T |
22216 |
cggaacagagccaaaaattggaattgtggacggattaaatggtggtgcagaagctgaaagtttcttggttggttcttttccggtttctatttcttctttc |
22315 |
T |
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