View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_low_107 (Length: 278)

Name: NF1107_low_107
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_low_107
NF1107_low_107
[»] chr5 (4 HSPs)
chr5 (1-266)||(43129730-43129994)
chr5 (1-72)||(32269636-32269708)
chr5 (1-94)||(27336889-27336983)
chr5 (1-72)||(34335533-34335605)
[»] chr2 (4 HSPs)
chr2 (1-94)||(9675040-9675134)
chr2 (1-94)||(23484755-23484849)
chr2 (1-94)||(17344834-17344928)
chr2 (22-94)||(44686636-44686708)
[»] chr4 (3 HSPs)
chr4 (1-93)||(6865631-6865724)
chr4 (9-94)||(3330155-3330240)
chr4 (1-94)||(50000742-50000836)
[»] chr6 (5 HSPs)
chr6 (1-93)||(32115885-32115978)
chr6 (1-67)||(33220555-33220622)
chr6 (26-103)||(34304718-34304796)
chr6 (28-93)||(357535-357600)
chr6 (1-56)||(28543571-28543627)
[»] chr1 (1 HSPs)
chr1 (28-93)||(34644790-34644855)
[»] chr7 (3 HSPs)
chr7 (1-103)||(45613649-45613753)
chr7 (9-94)||(28517104-28517189)
chr7 (16-92)||(983161-983237)
[»] chr3 (4 HSPs)
chr3 (1-72)||(29861993-29862065)
chr3 (9-93)||(37992537-37992621)
chr3 (9-93)||(39583047-39583131)
chr3 (9-93)||(52411720-52411804)
[»] chr8 (1 HSPs)
chr8 (1-94)||(39434863-39434957)
[»] scaffold0148 (1 HSPs)
scaffold0148 (9-74)||(33456-33521)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 43129730 - 43129994
Alignment:
Q  1 acatgcatttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacagcgtctc 100  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||  || |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43129730 acatgcatttttcctcctatccatccgtacatcataacatctgcatgcctaagtgtcgatcttctatctagtagatcagtaagaaagttcacagcgtctc 43129829  T
Q  101 cttgtactaatttgtttgagaaaaatgtctatgactgaattggaattacgtcggtaaagttgnnnnnnnnnnntatttaaattaaatatcaaactcaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  43129830 cttgtactaatttgtttgagaaaaatgtctatgactgaattggaattacgtcggtaaagttg-aaacaaaaaatatttaaattaaatatcaaactcaatc 43129928  T
Q  201 gttataccaacaatttgacgttgtagcttgttaatatttttagaccaactaattgattgatttcct 266  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43129929 gttataccaacaatttgacgttgtagcttgttaataattttagaccaactaattgattgatttcct 43129994  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 32269708 - 32269636
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagt 72  Q
    |||||||| |||||||||||  ||| |||||| ||||||||||||| || ||||||| |||||||||| ||||    
T  32269708 acatgcatgttttcctcctacccatccgtacaccataacatctgcagatttgagtgttgatcttctatctagt 32269636  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 27336889 - 27336983
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacag 94  Q
    |||||||| ||||||||| |  ||| |||||| ||||||||| |||   || |||||||||||||||| |||| | ||||| |||||||||||||    
T  27336889 acatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacag 27336983  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34335533 - 34335605
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagt 72  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| ||||   || |||||||||||||||| ||||    
T  34335533 acatgcatgttttcctcctactcatttgtacaccataacatatgcaagcctaagtgtcgatcttctatctagt 34335605  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 9675040 - 9675134
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacag 94  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||| | | || || |||||||||||||    
T  9675040 acatgcatgttttcctcctactcattcgtacatcataacatctgcatgtctaagtgtcgatcttttatttaatcggtcggtcagaaagttcacag 9675134  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23484849 - 23484755
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacag 94  Q
    |||||||| |||||||||||  ||| ||||||||||||||| |||||   ||||||| |||||||||| |||||| ||| | || ||||||||||    
T  23484849 acatgcatgttttcctcctacccatccgtacatcataacatatgcatgcttgagtgttgatcttctatatagtaggtcaatcaggaagttcacag 23484755  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 17344834 - 17344928
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacag 94  Q
    |||||||| |||||||||||  ||| |||||| ||||||||| ||||  |||||||| |||||||| | |||  | ||||| |||||||||||||    
T  17344834 acatgcatgttttcctcctacccatccgtacaccataacatccgcatgcctgagtgttgatcttctttctagcgggtcagtcagaaagttcacag 17344928  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 44686636 - 44686708
Alignment:
Q  22 cattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacag 94  Q
    |||| ||||| ||||||||| |||   || |||||| ||||||||| |||||||||||| | |||||||||||    
T  44686636 catttgtacaccataacatccgcaggcctaagtgtcaatcttctatctagtagatcagtcacaaagttcacag 44686708  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 6865724 - 6865631
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcaca 93  Q
    |||||||| |||||||||||  ||| |||||||||||||||| ||||| || |||||| ||||||||| || ||||||||| ||||||||||||    
T  6865724 acatgcatgttttcctcctacccatacgtacatcataacatccgcatacctaagtgtcaatcttctatctaatagatcagttagaaagttcaca 6865631  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 3330155 - 3330240
Alignment:
Q  9 ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacag 94  Q
    ||||||||| || ||| |||||| ||||||||||||||  || ||||| |||||||||| |||| | ||||| |||||||||||||    
T  3330155 ttttcctccaatccatccgtacaccataacatctgcatgcctaagtgttgatcttctatctagtgggtcagtcagaaagttcacag 3330240  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 50000836 - 50000742
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacag 94  Q
    |||||||| ||||||||| |  ||| |||||| ||||||||| |||   || |||||||||||||||| |||| | ||||| |||||||||||||    
T  50000836 acatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacag 50000742  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 32115885 - 32115978
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcaca 93  Q
    |||||||| ||||||||||| ||||  ||||| ||||||||| |||   |||||||| |||||||||| |||||| ||||| || |||||||||    
T  32115885 acatgcatgttttcctcctactcatctgtacaccataacatccgcaggcctgagtgttgatcttctatctagtaggtcagtcaggaagttcaca 32115978  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33220622 - 33220555
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctat 67  Q
    |||||||| ||||||||| | |||| ||||||||||||||||||||   ||||||||| |||||||||    
T  33220622 acatgcatgttttcctccaactcatccgtacatcataacatctgcaggcctgagtgtcaatcttctat 33220555  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 34304718 - 34304796
Alignment:
Q  26 cgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcaca-gcgtctcctt 103  Q
    |||||| ||||||||| |||   || |||||||||||||||| |||| | ||||| |||||||||||| ||||||||||    
T  34304718 cgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacatgcgtctcctt 34304796  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 357600 - 357535
Alignment:
Q  28 tacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcaca 93  Q
    |||| ||||||||||||||| || |||||||||||||||| ||||   ||||| | ||||||||||    
T  357600 tacaccataacatctgcatacctaagtgtcgatcttctatctagtgtgtcagtcaaaaagttcaca 357535  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28543571 - 28543627
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgt 56  Q
    |||||||| |||||||||||| |||  ||||||||||||||||||||  ||||||||    
T  28543571 acatgcatgttttcctcctatccatctgtacatcataacatctgcatgcctgagtgt 28543627  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 34644790 - 34644855
Alignment:
Q  28 tacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcaca 93  Q
    |||| ||||||||| ||||| || |||||||||||||||| |||| | ||||| ||||||||||||    
T  34644790 tacaccataacatccgcatacctaagtgtcgatcttctatctagtgggtcagtcagaaagttcaca 34644855  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 45613753 - 45613649
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacag-cgtc 98  Q
    |||||||| |||||||||||  |||||||||||||||||||| |||   |||||||| |||||||| | |||  | ||||| || |||||||||| ||||    
T  45613753 acatgcatgttttcctcctacccattcgtacatcataacatccgcaggcctgagtgttgatcttctttctagcgggtcagtcaggaagttcacagacgtc 45613654  T
Q  99 tcctt 103  Q
    |||||    
T  45613653 tcctt 45613649  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 28517189 - 28517104
Alignment:
Q  9 ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacag 94  Q
    ||||||||| |  ||| |||||| |||||||| ||||   || |||||||||||||||| |||| | ||||| |||||||||||||    
T  28517189 ttttcctccaacccatccgtacaccataacatttgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacag 28517104  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 983161 - 983237
Alignment:
Q  16 cctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcac 92  Q
    |||| |||||||||||||||||| || | ||  |||||||| |||||||||| |||| | ||||| || ||||||||    
T  983161 cctactcattcgtacatcataacttccggatgcctgagtgttgatcttctatctagtgggtcagttaggaagttcac 983237  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 29861993 - 29862065
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagt 72  Q
    |||||||| |||||||||||  ||| |||||| ||||||||||||||  || |||||||||||||||| ||||    
T  29861993 acatgcatgttttcctcctacccatccgtacaccataacatctgcatgcctaagtgtcgatcttctatctagt 29862065  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 37992537 - 37992621
Alignment:
Q  9 ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcaca 93  Q
    |||||||||||  ||| ||||||||||||||||| || | || |||||| |||||||||  ||| | ||||| ||||||||||||    
T  37992537 ttttcctcctacccatccgtacatcataacatctacagacctaagtgtccatcttctatcaagtgggtcagtgagaaagttcaca 37992621  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 39583131 - 39583047
Alignment:
Q  9 ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcaca 93  Q
    |||||||||||  ||| ||||||  |||||||| ||||  || |||||||||||||||| |||| | ||| | ||||||||||||    
T  39583131 ttttcctcctacccatccgtacactataacatccgcatgcctaagtgtcgatcttctatctagtgggtcaatcagaaagttcaca 39583047  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 52411804 - 52411720
Alignment:
Q  9 ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcaca 93  Q
    |||||||||| | |||||| |||||||||||||||||   || || ||| ||||||||| |||| | ||||| | ||||||||||    
T  52411804 ttttcctcctgtccattcggacatcataacatctgcaggcctaagcgtcaatcttctatctagtgggtcagttaaaaagttcaca 52411720  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 39434863 - 39434957
Alignment:
Q  1 acatgcat-ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtagatcagtaagaaagttcacag 94  Q
    |||||||| ||||||||| |  ||| |||||| |||||||||  || | || |||||||||||||||| |||| | ||||| |||||||||||||    
T  39434863 acatgcatgttttcctccaacccatccgtacaccataacatcgacagacctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacag 39434957  T

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Target: scaffold0148 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 33456 - 33521
Alignment:
Q  9 ttttcctcctattcattcgtacatcataacatctgcatatctgagtgtcgatcttctatttagtag 74  Q
    |||||||||||  ||| |||||| ||||||||| ||||  |||||||| |||||||||| ||||||    
T  33456 ttttcctcctacccatccgtacaccataacatccgcatgcctgagtgttgatcttctatctagtag 33521  T

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