View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_low_108 (Length: 277)

Name: NF1107_low_108
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_low_108
NF1107_low_108
[»] chr7 (29 HSPs)
chr7 (37-249)||(2307960-2308175)
chr7 (38-211)||(23032697-23032869)
chr7 (37-207)||(40848873-40849042)
chr7 (37-110)||(48642802-48642875)
chr7 (37-113)||(47646704-47646780)
chr7 (134-211)||(26214999-26215076)
chr7 (133-197)||(27215101-27215165)
chr7 (131-194)||(6880010-6880073)
chr7 (33-194)||(30079498-30079656)
chr7 (37-163)||(32942013-32942139)
chr7 (37-113)||(8568538-8568614)
chr7 (131-211)||(26524833-26524913)
chr7 (37-202)||(29211546-29211709)
chr7 (132-195)||(47483728-47483791)
chr7 (142-194)||(1739919-1739971)
chr7 (134-194)||(20306715-20306775)
chr7 (142-194)||(31287679-31287731)
chr7 (37-113)||(46147238-46147309)
chr7 (131-202)||(524773-524844)
chr7 (131-194)||(43202541-43202604)
chr7 (37-75)||(8118302-8118340)
chr7 (145-195)||(27456471-27456521)
chr7 (136-194)||(37375438-37375496)
chr7 (12-45)||(2308177-2308210)
chr7 (142-195)||(10338720-10338773)
chr7 (131-176)||(29628212-29628257)
chr7 (133-194)||(31012969-31013029)
chr7 (39-75)||(7685940-7685976)
chr7 (37-113)||(7697306-7697382)
[»] chr3 (16 HSPs)
chr3 (37-113)||(10481629-10481705)
chr3 (37-195)||(2832298-2832454)
chr3 (37-113)||(20846494-20846569)
chr3 (39-113)||(26291940-26292014)
chr3 (129-194)||(25465909-25465974)
chr3 (37-113)||(26758246-26758322)
chr3 (129-202)||(52632141-52632214)
chr3 (37-113)||(4554708-4554784)
chr3 (37-113)||(17144714-17144790)
chr3 (37-109)||(54122043-54122115)
chr3 (37-109)||(55467635-55467702)
chr3 (131-194)||(8557863-8557926)
chr3 (37-116)||(42363207-42363285)
chr3 (142-194)||(4554811-4554863)
chr3 (49-113)||(8557942-8558006)
chr3 (142-194)||(54122437-54122489)
[»] chr5 (22 HSPs)
chr5 (37-211)||(27571933-27572105)
chr5 (48-211)||(18845545-18845703)
chr5 (131-211)||(2589082-2589162)
chr5 (37-109)||(41454886-41454958)
chr5 (42-113)||(34969352-34969423)
chr5 (39-113)||(22747557-22747631)
chr5 (37-113)||(6633342-6633413)
chr5 (131-207)||(18432195-18432271)
chr5 (39-113)||(20191968-20192037)
chr5 (39-195)||(26007281-26007435)
chr5 (142-194)||(691467-691519)
chr5 (142-194)||(6595103-6595155)
chr5 (142-206)||(6633440-6633504)
chr5 (130-194)||(6718697-6718761)
chr5 (130-194)||(11402703-11402767)
chr5 (142-194)||(25495207-25495259)
chr5 (142-194)||(41454990-41455042)
chr5 (131-202)||(34111677-34111748)
chr5 (131-205)||(23411797-23411871)
chr5 (131-195)||(7591469-7591532)
chr5 (44-108)||(25495114-25495178)
chr5 (142-194)||(33792789-33792841)
[»] scaffold0664 (1 HSPs)
scaffold0664 (49-191)||(6030-6171)
[»] chr6 (18 HSPs)
chr6 (131-202)||(892237-892308)
chr6 (131-194)||(4562966-4563029)
chr6 (37-202)||(19135009-19135172)
chr6 (131-211)||(14564543-14564623)
chr6 (38-211)||(28632958-28633128)
chr6 (40-113)||(7170081-7170154)
chr6 (131-192)||(29048230-29048291)
chr6 (37-194)||(30752553-30752709)
chr6 (37-113)||(22413860-22413936)
chr6 (131-221)||(13859268-13859357)
chr6 (142-202)||(7169988-7170048)
chr6 (130-194)||(7676260-7676324)
chr6 (140-195)||(4577206-4577261)
chr6 (135-190)||(8064604-8064659)
chr6 (133-207)||(17306470-17306543)
chr6 (14-67)||(31945459-31945513)
chr6 (37-69)||(4562879-4562911)
chr6 (142-194)||(31945340-31945392)
[»] chr8 (17 HSPs)
chr8 (39-203)||(4785260-4785418)
chr8 (37-190)||(6591250-6591401)
chr8 (37-190)||(6616945-6617096)
chr8 (131-211)||(3129457-3129537)
chr8 (37-113)||(33565979-33566055)
chr8 (37-113)||(40436459-40436530)
chr8 (37-75)||(22811195-22811233)
chr8 (131-208)||(12074084-12074161)
chr8 (36-113)||(30254110-30254187)
chr8 (37-108)||(6649542-6649613)
chr8 (37-100)||(11218972-11219035)
chr8 (136-207)||(12912604-12912675)
chr8 (37-75)||(7428455-7428493)
chr8 (37-113)||(31497583-31497659)
chr8 (142-194)||(37162562-37162614)
chr8 (142-194)||(38926340-38926392)
chr8 (37-109)||(44336795-44336866)
[»] scaffold0204 (2 HSPs)
scaffold0204 (131-195)||(25973-26037)
scaffold0204 (131-194)||(14631-14694)
[»] chr4 (29 HSPs)
chr4 (131-195)||(48338451-48338515)
chr4 (37-108)||(29335108-29335179)
chr4 (37-113)||(20986444-20986520)
chr4 (37-189)||(11031546-11031700)
chr4 (131-211)||(48293303-48293383)
chr4 (142-221)||(17845008-17845087)
chr4 (131-194)||(49640951-49641014)
chr4 (164-221)||(18881927-18881984)
chr4 (131-188)||(32223231-32223288)
chr4 (44-112)||(8484695-8484763)
chr4 (39-91)||(19753527-19753579)
chr4 (39-91)||(19786227-19786279)
chr4 (37-113)||(21069068-21069144)
chr4 (131-187)||(26674224-26674280)
chr4 (131-191)||(51907177-51907237)
chr4 (131-194)||(5122292-5122355)
chr4 (131-194)||(6101993-6102056)
chr4 (135-194)||(8312002-8312061)
chr4 (38-113)||(15723905-15723980)
chr4 (130-192)||(18319477-18319540)
chr4 (130-192)||(18399141-18399204)
chr4 (38-113)||(23625885-23625960)
chr4 (15-109)||(42198784-42198873)
chr4 (141-194)||(21069171-21069224)
chr4 (142-206)||(45983500-45983565)
chr4 (133-194)||(48602434-48602495)
chr4 (134-187)||(48684892-48684945)
chr4 (142-194)||(23120161-23120213)
chr4 (142-194)||(42198904-42198956)
[»] chr2 (16 HSPs)
chr2 (135-195)||(28790620-28790680)
chr2 (37-113)||(30759632-30759708)
chr2 (131-211)||(1331115-1331194)
chr2 (37-113)||(5862615-5862691)
chr2 (37-176)||(13193921-13194053)
chr2 (131-211)||(17762852-17762933)
chr2 (133-194)||(31719988-31720049)
chr2 (131-195)||(6946459-6946523)
chr2 (131-194)||(27301394-27301457)
chr2 (137-207)||(12041492-12041562)
chr2 (142-195)||(30761661-30761714)
chr2 (37-113)||(41461104-41461175)
chr2 (12-110)||(12841537-12841636)
chr2 (37-100)||(27301486-27301544)
chr2 (26-68)||(12884537-12884579)
chr2 (81-113)||(44085546-44085578)
[»] chr1 (28 HSPs)
chr1 (37-100)||(23475109-23475172)
chr1 (129-211)||(47984393-47984475)
chr1 (37-114)||(8165534-8165611)
chr1 (131-211)||(8268751-8268831)
chr1 (131-211)||(10847424-10847504)
chr1 (39-211)||(36203329-36203501)
chr1 (37-113)||(11074383-11074459)
chr1 (131-194)||(15882063-15882126)
chr1 (14-113)||(25559984-25560085)
chr1 (38-113)||(26345042-26345117)
chr1 (131-194)||(32910278-32910341)
chr1 (144-194)||(6694282-6694332)
chr1 (145-202)||(12973688-12973745)
chr1 (131-207)||(15880047-15880123)
chr1 (142-194)||(26344962-26345014)
chr1 (37-97)||(27350681-27350741)
chr1 (131-211)||(35980170-35980250)
chr1 (133-176)||(17651868-17651911)
chr1 (131-194)||(17989162-17989225)
chr1 (129-194)||(19051216-19051280)
chr1 (130-211)||(24630070-24630151)
chr1 (44-113)||(40095405-40095474)
chr1 (142-195)||(52828937-52828990)
chr1 (37-113)||(12973582-12973658)
chr1 (37-113)||(16529484-16529560)
chr1 (37-113)||(32910358-32910429)
chr1 (37-109)||(39158311-39158383)
chr1 (33-61)||(44918561-44918589)
[»] scaffold0470 (1 HSPs)
scaffold0470 (37-190)||(6263-6414)
[»] scaffold0012 (1 HSPs)
scaffold0012 (131-179)||(241120-241168)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 2308175 - 2307960
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaat---gcggtttgagttggatcggttagttcagnnnnnnnncaaga 133  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   | ||||||||||||||||||||||||||        ||| |    
T  2308175 ggtttggttcggttgatttttaaaataaaatttgaaccacaccaaatcaaaccaataatgtggtttgagttggatcggttagttcagttttttttcaaaa 2308076  T
Q  134 caatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgacgataatttaattcnnnnnnngt 233  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||       ||    
T  2308075 caatacaattttttgtttgcaacattaaaatcgaattaaaaagttataacacaacatatttctagcaatatttcggacgataatttaattctttttttgt 2307976  T
Q  234 tcaaatcatcacaagt 249  Q
    ||||||||||||||||    
T  2307975 tcaaatcatcacaagt 2307960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 23032697 - 23032869
Alignment:
Q  38 gtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaat 137  Q
    ||||||||||||||| |||||||||||||||||||||| | |||| |||||||||| ||||||  |||||||||||  | | |        | |||||||    
T  23032697 gtttggttcggttgacttttaaaataaaatttgaaccaaaccaaaccaaaccaatgaggtttggattggatcggttgatactg--tttttgcgagacaat 23032794  T
Q  138 aca-attttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    |||  |||||||||| ||||||||||||  | |||||||| || ||||||||||||||| ||||||| |||||||    
T  23032795 acattttttttgttttcaacatgaaaattcagttaaaaaggtaaaacacaacatatttccagcaatacttccgac 23032869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 40848873 - 40849042
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    |||||||||||||||| ||||||||||||||  |||||| || ||| ||||| ||||||||||| |||| ||||||| || | |           |||||    
T  40848873 ggtttggttcggttgacttttaaaataaaatccgaaccaaataaaaccaaactaatgcggtttgggttgaatcggttggtgcggtttttttg--ggacaa 40848970  T
Q  137 tacaa-ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 207  Q
    ||||| |||||||||| |||||| |||||||| |||||||| || ||||||||||||||| |||||| ||||    
T  40848971 tacaatttttttgttttcaacattaaaatcgagttaaaaagataaaacacaacatatttccagcaatgtttc 40849042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 48642802 - 48642875
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcg 110  Q
    |||||||||||||||| ||| ||||| |||||||||||| | |||| ||||||||||||||||| |||||||||    
T  48642802 ggtttggttcggttgactttaaaaattaaatttgaaccaaaccaaaccaaaccaatgcggtttgggttggatcg 48642875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 47646780 - 47646704
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||| |||| ||| | |||||| ||||||||||||    
T  47646780 ggtttggttcggttgatttttaaaataaagtttgaaccaaaccaaaccaaatcaacgtggtttgtgttggatcggtt 47646704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 26215076 - 26214999
Alignment:
Q  134 caatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||| |||||||||||| |||||| |||||| |||||||||| || ||||||||||||||| | |||| ||||||||    
T  26215076 caatataattttttgtttccaacattaaaatcaaattaaaaaggtaaaacacaacatatttccatcaatgtttccgac 26214999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 27215165 - 27215101
Alignment:
Q  133 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttcta 197  Q
    ||||||||||||||||||| |||||| ||||| || ||||||||||| ||||||||||| |||||    
T  27215165 acaatacaattttttgtttccaacattaaaattgagttaaaaagttaaaacacaacatacttcta 27215101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 6880073 - 6880010
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||||||| |||| | |||||| | ||||||||||| ||||||||||||||    
T  6880073 agacaatacaattttttgttttcaaccttaaaatcaagttaaaaagttaaaacacaacatattt 6880010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 30079656 - 30079498
Alignment:
Q  33 atgcggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaag 132  Q
    ||||||||||||| | |||| ||| |||||||||| | ||| | |  ||||||||||||||||||||| |||||||||||| || | |          ||    
T  30079656 atgcggtttggtttgattgactttaaaaataaaatctaaacgaaactaaatcaaaccaatgcggtttgggttggatcggttggtgcggttttttt---ag 30079560  T
Q  133 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    || |||||||||||||||| |||||| |||||| | |||||||| || ||||||| ||||||    
T  30079559 acgatacaattttttgtttccaacattaaaatcaacttaaaaagctaaaacacaatatattt 30079498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 163
Target Start/End: Complemental strand, 32942139 - 32942013
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    |||||| ||||||||| |||||||||| |||  |||||| | |||| |||||||||| |||||||||||||||| || || | |        | ||||||    
T  32942139 ggtttgattcggttgacttttaaaatacaatccgaaccaaaccaaaccaaaccaatgtggtttgagttggatcgattggtgcggttttttttcgagacaa 32942040  T
Q  137 tacaattttttgtttgcaacatgaaaa 163  Q
    ||||||||||||||| |||||| ||||    
T  32942039 tacaattttttgtttccaacattaaaa 32942013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 8568614 - 8568538
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||| ||||||||||| ||||||||||||||  |||| | || ||||||||| |||||||||||  |||||||||||    
T  8568614 ggttcggttcggttgacttttaaaataaaatccgaactaaatgaaatcaaactaatgcggtttggattggatcggtt 8568538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 26524913 - 26524833
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||||| ||||||| ||||| |||||| |||||  | |||||||| || |||||||||||||||||||||| ||| ||||    
T  26524913 agacaatgcaattttctgtttccaacattaaaataaagttaaaaagctaaaacacaacatatttctagcaatgttttcgac 26524833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 29211709 - 29211546
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    ||||| ||||||| ||||||| ||||| |||  |||||| | |||| ||||||||||| | |||||||||||||||| || | |        | | ||||    
T  29211709 ggtttcgttcggtcgatttttgaaatacaatccgaaccaaaccaaaccaaaccaatgcaggttgagttggatcggttggtgcggtttttt--cgaaacaa 29211612  T
Q  137 tacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 202  Q
    |||||||||||||||||||||| |||||  | |||||||  || ||||||| ||||||| ||||||    
T  29211611 tacaattttttgtttgcaacattaaaatatagttaaaaaagtaaaacacaatatatttcgagcaat 29211546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 47483728 - 47483791
Alignment:
Q  132 gacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    |||||||| ||||||||||| |||||| |||||||| ||||||| || | ||||||||||||||    
T  47483728 gacaatacgattttttgttttcaacattaaaatcgagttaaaaaattgttacacaacatatttc 47483791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 1739919 - 1739971
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||  ||||| |||||||||||||||||||| |||||||| |||||    
T  1739919 ttttttgtttttaacattaaaatcgaattaaaaagttaaaacacaacgtattt 1739971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 20306715 - 20306775
Alignment:
Q  134 caatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||| ||||||||| ||| |||| |||||||||| ||||||||| | ||||||||||||||    
T  20306715 caatgcaattttttatttccaacttgaaaatcgagttaaaaagtaaaaacacaacatattt 20306775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 31287731 - 31287679
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||||| |||||| ||||||||||||| | ||||||||||||    
T  31287731 ttttttgtttccaacattaaaatcaaattaaaaagttaaaccacaacatattt 31287679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 46147238 - 46147309
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||| |||||| |||||||||||||| |||||||     || ||||||||||||||||  ||||||||||||    
T  46147238 ggtttggtttggttgacttttaaaataaaatctgaacca-----aaccaaaccaatgcggtttacgttggatcggtt 46147309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 524844 - 524773
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 202  Q
    ||||||||||||||||| ||| |||||| ||||| || |||| ||| || | ||||||||||||| ||||||    
T  524844 agacaatacaattttttattttcaacattaaaattgagttaagaaggtaaagcacaacatatttccagcaat 524773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 43202541 - 43202604
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||||||| |||||| |||||  | |||||||  || ||||||||||||||    
T  43202541 agacaatacaattttttgtttccaacattaaaattaagttaaaaaagtaaaacacaacatattt 43202604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 8118340 - 8118302
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaacca 75  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  8118340 ggtttggttcggttgattttaaaaataaaatctgaacca 8118302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 27456471 - 27456521
Alignment:
Q  145 tttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    ||||||| |||||| ||||||||||| ||||| || |||||||||||||||    
T  27456471 tttgtttccaacattaaaatcgaattgaaaaggtaaaacacaacatatttc 27456521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 37375438 - 37375496
Alignment:
Q  136 atacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||||||||| |||||| |||||| | ||||||| ||  ||||||||||||||    
T  37375438 atacaattttttgtttccaacattaaaatcaagttaaaaattttaaacacaacatattt 37375496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 2308210 - 2308177
Alignment:
Q  12 atgaaccgaaagataaaaattatgcggtttggtt 45  Q
    |||||||| |||||||||||||||||||||||||    
T  2308210 atgaaccggaagataaaaattatgcggtttggtt 2308177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 10338773 - 10338720
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    |||||||||| |||| | |||||| | |||||||| ||||||||||||||||||    
T  10338773 ttttttgttttcaacgttaaaatcaatttaaaaagctataacacaacatatttc 10338720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 29628212 - 29628257
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaag 176  Q
    ||||||||||||||||||||| |||||| |||| ||| ||||||||    
T  29628212 agacaatacaattttttgtttccaacattaaaaccgagttaaaaag 29628257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 31013029 - 31012969
Alignment:
Q  133 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||||| |||||| |||| | | ||||||||||| ||||||| ||||||    
T  31013029 acaatacaattttttgttttcaacattaaaa-caagttaaaaagttaaaacacaatatattt 31012969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 7685976 - 7685940
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaacca 75  Q
    ||||||||  |||||||||||||||||||||||||||    
T  7685976 tttggttcatttgatttttaaaataaaatttgaacca 7685940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 7697306 - 7697382
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||| ||||| ||||||||||||||  | | || | |||| |||||||||||||||||  || ||||||||    
T  7697306 ggtttggttctgttgaattttaaaataaaatccggatcaaaccaaaccaaaccaatgcggtttggatttgatcggtt 7697382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 10481705 - 10481629
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||||||||||||||||||| || | ||||||||||||||| |||||||||||||||||||    
T  10481705 ggtttggttcggttgacttttaaaataaaatttgaatcaaaccaaatcaaaccaatgtggtttgagttggatcggtt 10481629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 195
Target Start/End: Complemental strand, 2832454 - 2832298
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    |||||||||||||||| ||||||||||||||  ||| || | |||||||||||||||||||||| ||| |||||||| || | |          ||||||    
T  2832454 ggtttggttcggttgacttttaaaataaaatccgaatcaaaccaaatcaaaccaatgcggtttgggtttgatcggttggtgcgggttttttg--agacaa 2832357  T
Q  137 tacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    ||||||||| ||||| |||||| |||||||| || ||||| || |||||||| ||||||    
T  2832356 tacaattttatgttttcaacattaaaatcgagtttaaaaggtaaaacacaacgtatttc 2832298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 20846494 - 20846569
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||||||||||||||   ||||| | |||||||||||||||||||||| ||||||||||||    
T  20846494 ggtttggttcggttgacttttaaaataaaatccaaacca-accaaatcaaaccaatgcggtttgggttggatcggtt 20846569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 26292014 - 26291940
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||  |||| ||| ||||||||    
T  26292014 tttggttcggttgatttttaaaatagaatctgaaccaaaccaaatcaaaccaatgcaatttgggttagatcggtt 26291940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 25465909 - 25465974
Alignment:
Q  129 caagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||||||||| |||||| |||||| | |||||| | || ||||||||||||||    
T  25465909 caagacaatacaattttttgttttcaacattaaaatcaagttaaaaggctaaaacacaacatattt 25465974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 26758246 - 26758322
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| |||||||||||| | ||| ||| | ||||  |||||||||||||||| |||| |||||||    
T  26758246 ggtttggttcggttgacttttaaaataaagtctgatccaaaccaaactaaaccaatgcggtttgggttgtatcggtt 26758322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 52632141 - 52632214
Alignment:
Q  129 caagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 202  Q
    |||||||| | |||||||||||| |||||| |||||||| |||||||  || | |||||||||||| |||||||    
T  52632141 caagacaacataattttttgtttccaacattaaaatcgagttaaaaatgtaaagcacaacatatttttagcaat 52632214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 4554708 - 4554784
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||| ||| ||| ||   ||||| | |||| ||||| ||||||||||||||||||||||||    
T  4554708 ggtttggttcggttgactttaaaagtaacatccaaaccaaaccaaaccaaactaatgcggtttgagttggatcggtt 4554784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 17144790 - 17144714
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| |||||||||| |||  ||| || | |||  |||||||||| |||||| ||||||||||||    
T  17144790 ggtttggttcggttgacttttaaaatagaatccgaagcaaaccaagccaaaccaatgtggtttgggttggatcggtt 17144714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 54122043 - 54122115
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    |||||||||||||||| ||||||||||||||  |||||| | |||| |||| |||||  |||||| |||||||    
T  54122043 ggtttggttcggttgacttttaaaataaaatccgaaccaaaccaaaccaaaacaatgatgtttgaattggatc 54122115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 55467702 - 55467635
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    |||||||||||||||| ||||||||||||||  ||||     ||||||||||||||||||||||  |||||||    
T  55467702 ggtttggttcggttgacttttaaaataaaatccgaac-----caaatcaaaccaatgcggtttggattggatc 55467635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 8557926 - 8557863
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||| |||||||||||||||| |||||| |||||| | |||||||| |  ||||||||||||||    
T  8557926 agacgatacaattttttgtttccaacattaaaatcaagttaaaaagcttaaacacaacatattt 8557863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 42363285 - 42363207
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagt 116  Q
    |||||||||||||||| ||| |||| |||||  |||||| | |||||| |||||||||||||||  |||||||| |||||    
T  42363285 ggtttggttcggttgactttaaaaacaaaatccgaaccaaaccaaatc-aaccaatgcggtttggtttggatcgattagt 42363207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 4554811 - 4554863
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||| |||||    ||||||||||| ||||||||||||||    
T  4554811 ttttttgtttgcaacattaaaattaggttaaaaagttaaaacacaacatattt 4554863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 8558006 - 8557942
Alignment:
Q  49 ttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||| ||| ||||||||||  |||||| | |||| ||||||||||||||||| || |||||||||    
T  8558006 ttgactttaaaaataaaatccgaaccaaaccaaaccaaaccaatgcggtttgggtcggatcggtt 8557942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 54122437 - 54122489
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||||| |||||| ||||||||||||| | || |||||||||    
T  54122437 ttttttgttttcaacattaaaatcaaattaaaaagttaaaccataacatattt 54122489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 211
Target Start/End: Complemental strand, 27572105 - 27571933
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    |||||||||||||||  ||||||||||||||  |||||| | |||| ||||||||||||||||| |||||||||||| || | |        | ||||||    
T  27572105 ggtttggttcggttgtcttttaaaataaaatccgaaccaaaccaaaccaaaccaatgcggtttgggttggatcggttggtgcgg--ttttttcgagacaa 27572008  T
Q  137 tacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||||||||||||| |||||| ||||| || |||||||  || ||||| ||||||||| |||||| ||| ||||    
T  27572007 tacaattttttgtttccaacattaaaattgagttaaaaaagtaaaacacgacatatttccagcaatgttttcgac 27571933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 211
Target Start/End: Original strand, 18845545 - 18845703
Alignment:
Q  48 gttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaatacaatttttt 147  Q
    ||||| |||||||||||||| |||||||     || ||||||| ||||||||| |||||||||||| || ||         | |||| ||||||||||||    
T  18845545 gttgagttttaaaataaaatctgaacca-----aaccaaaccactgcggtttgggttggatcggttggtgcattttttttaccagacgatacaatttttt 18845639  T
Q  148 gtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    |||| |||||| |||||| | ||||||||  | ||||||||||| |||||||||| ||||||||    
T  18845640 gtttccaacattaaaatcaagttaaaaagccaaaacacaacataattctagcaatgtttccgac 18845703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 2589082 - 2589162
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||||||||||||||||||| |||  | |||||| | ||||||||||| ||||||||||| |||| ||||| ||||||||    
T  2589082 agacaatacaattttttgtttccaattttaaaatcaagttaaaaagttaaaacacaacatacttctggcaatgtttccgac 2589162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 41454886 - 41454958
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    |||| ||||||||||| |||||||||||||| ||||||| | |||| |||||||||||||||||  |||||||    
T  41454886 ggttcggttcggttgacttttaaaataaaatctgaaccaaaccaaaccaaaccaatgcggtttggattggatc 41454958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 34969352 - 34969423
Alignment:
Q  42 ggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||| |||||||||||||||| ||||  |||||| |||||||||| | |||| ||||||||||||    
T  34969352 ggttcggttgacttttaaaataaaatttaaacctaatcaaaccaaaccaatgtgatttgggttggatcggtt 34969423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 22747631 - 22747557
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||| |||| |||||||||||||||||||| | | |||| ||||| ||||| ||||| ||||||||||||    
T  22747631 tttggttcgattgacttttaaaataaaatttgaacaaaaccaaaccaaactaatgcagtttgggttggatcggtt 22747557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 6633342 - 6633413
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||| |||||| |||||||||||||| |||||||     || |||||||||| |||||||||||||||||||    
T  6633342 ggtttggtttggttgacttttaaaataaaatctgaacca-----aaccaaaccaatgtggtttgagttggatcggtt 6633413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 18432195 - 18432271
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 207  Q
    |||||| |||||||||||||| | |||| |||||||| |||||||| || ||||||||||||||  | |||||||||    
T  18432195 agacaacacaattttttgttttcgacattaaaatcgagttaaaaaggtaaaacacaacatattttcaacaatatttc 18432271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 20192037 - 20191968
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||| ||||||||||||||  |||| |     ||||||||||||||||||||| |||||||||||    
T  20192037 tttggttcggttgacttttaaaataaaatccgaacta-----aatcaaaccaatgcggtttgaattggatcggtt 20191968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 195
Target Start/End: Complemental strand, 26007435 - 26007281
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaata 138  Q
    ||||||| |||| | |||||||||||||| ||||||| | |||| ||||  || | ||| |||||||||||||||||| | |          ||||||||    
T  26007435 tttggtttggtttacttttaaaataaaatctgaaccaaaccaaaccaaattaacgtggtctgagttggatcggttagtgcggttttattt--agacaata 26007338  T
Q  139 caattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
     ||||| | |||| |||||| |||||| | |||||||| ||||||||||||||||||    
T  26007337 taatttgtcgttttcaacattaaaatcaagttaaaaagctataacacaacatatttc 26007281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 691519 - 691467
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||||| |||||| | ||||||||||| ||||||||||||||    
T  691519 ttttttgtttccaacattaaaatcaagttaaaaagttaaaacacaacatattt 691467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 6595103 - 6595155
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||||| ||||||  |||||||||||| ||||||||||||||    
T  6595103 ttttttgtttccaacattaaaatcagattaaaaagttaaaacacaacatattt 6595155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 6633440 - 6633504
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatattt 206  Q
    |||||||||| |||||| |||||| | |||||||| || ||||||||||||||  ||||||||||    
T  6633440 ttttttgttttcaacattaaaatccagttaaaaaggtaaaacacaacatattttcagcaatattt 6633504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 6718697 - 6718761
Alignment:
Q  130 aagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||||||||  ||| | ||||| || |||||||| |||||||||| ||||||    
T  6718697 aagacaatacaattttttgtttttaacgttaaaattgagttaaaaagctataacacaatatattt 6718761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 11402703 - 11402767
Alignment:
Q  130 aagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||| |||||||||||||||| |||||| |||||| | |||||||| |  ||||||||||||||    
T  11402703 aagacgatacaattttttgtttccaacattaaaatcaagttaaaaagctgaaacacaacatattt 11402767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 25495207 - 25495259
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||||| |||||| |||||||||| || ||||||||||||||    
T  25495207 ttttttgttttcaacattaaaatcaaattaaaaaggtaaaacacaacatattt 25495259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 41454990 - 41455042
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||||| |||||| |||||||||| || ||||||||||||||    
T  41454990 ttttttgtttccaacattaaaatcaaattaaaaagctaaaacacaacatattt 41455042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 34111748 - 34111677
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 202  Q
    |||||||||||||||||||||  || || |||||| |||||||||| ||  || ||||||||||| ||||||    
T  34111748 agacaatacaattttttgtttttaatatcaaaatcaaattaaaaaggtaacacgcaacatatttccagcaat 34111677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 23411797 - 23411871
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatt 205  Q
    ||||||| ||||||||||||| |||||| |||||| ||| | || | || ||| ||||||||||| |||||||||    
T  23411797 agacaattcaattttttgttttcaacattaaaatcaaatcataaggctaaaacgcaacatatttcaagcaatatt 23411871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 7591532 - 7591469
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    |||||||| |||||||||||| |||||| |||||  | ||||||||||| || ||||||||||||    
T  7591532 agacaatataattttttgttttcaacattaaaat-aagttaaaaagttaaaatacaacatatttc 7591469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 25495114 - 25495178
Alignment:
Q  44 ttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggat 108  Q
    ||||||||||||||||||||||||  |||| | | |||| | |||||||| ||||||| ||||||    
T  25495114 ttcggttgatttttaaaataaaatccgaacaaaaccaaacccaaccaatgtggtttgaattggat 25495178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 33792789 - 33792841
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||| | |||||| |||||||||| || ||||||||||||||    
T  33792789 ttttttgttttcaacgttaaaatcaaattaaaaaggtaaaacacaacatattt 33792841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 6030 - 6171
Alignment:
Q  49 ttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaatacaattttttg 148  Q
    |||||||||||||||||||| |||||| | |||| ||||||||||||||||| |||||||||||| || |||         || ||||| ||||||||||    
T  6030 ttgatttttaaaataaaattcgaaccaaaccaaaccaaaccaatgcggtttgggttggatcggtttgtgcagttgttatcgaa-acaattcaattttttg 6128  T
Q  149 tttgcaacatgaaaatcgaattaaaaagttataacacaacata 191  Q
    ||| |||||| |||||| |||||||||| || ||| |||||||    
T  6129 tttacaacatcaaaatcaaattaaaaagctaaaacgcaacata 6171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 892308 - 892237
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 202  Q
    |||||||| |||||||||||| |||||| |||||||| ||| ||||||| ||||||||||||||||||||||    
T  892308 agacaatataattttttgttttcaacattaaaatcgagttagaaagttaaaacacaacatatttctagcaat 892237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 4562966 - 4563029
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  4562966 agacaatacaattttttgtttccaacattaaaatcgagttaaaaagctataacacaacatattt 4563029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 19135172 - 19135009
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    |||||||||||||||| |||||||||||||| ||||||| | |||||||||| |||||| ||||  |||||||||||  |   |          ||||||    
T  19135172 ggtttggttcggttgacttttaaaataaaatatgaaccaaaccaaatcaaactaatgcgatttggattggatcggttgatgtggtttttttt--agacaa 19135075  T
Q  137 tacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 202  Q
    ||||||||||||||| |||||| |||||||| |||||||| || |||||  |||||||| ||||||    
T  19135074 tacaattttttgttttcaacattaaaatcgagttaaaaaggtaaaacacggcatatttccagcaat 19135009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 14564543 - 14564623
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    |||||||||||||||||||||  ||||| |||||| | |||||||  || ||||||||||||||||| |||| ||||||||    
T  14564543 agacaatacaattttttgtttcgaacattaaaatcaagttaaaaaactaaaacacaacatatttctaacaatgtttccgac 14564623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 28632958 - 28633128
Alignment:
Q  38 gtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaat 137  Q
    ||||||||||||||| ||||||||||| |||||||||| | | || |||| |||||||||||  ||||||||||||  | | |        | |||||||    
T  28632958 gtttggttcggttgacttttaaaataatatttgaaccaaaccgaaccaaatcaatgcggttttggttggatcggttgatgcgg--ttttttcgagacaat 28633055  T
Q  138 acaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    | || ||||||||| |||||| | |||||| |||||||| || || |||||||||||||| |||| ||||||||    
T  28633056 ataa-tttttgttttcaacattagaatcgatttaaaaaggtaaaatacaacatatttctaacaatgtttccgac 28633128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 7170154 - 7170081
Alignment:
Q  40 ttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||| |||||||| |||||||||||||||  ||||| | ||||||||||||||| ||||||  |||||||||||    
T  7170154 ttggatcggttgacttttaaaataaaattcaaaccaaaccaaatcaaaccaatgtggtttggattggatcggtt 7170081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 29048230 - 29048291
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatat 192  Q
    |||||||| | |||||||||| |||||| |||||| ||||||||||||| ||||||||||||    
T  29048230 agacaataaatttttttgtttccaacattaaaatcaaattaaaaagttaaaacacaacatat 29048291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 30752553 - 30752709
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    |||||||||||||||| ||||||| |||||||  || || | |||||||||||||||||||||  |||| |||| || || | |        | ||||||    
T  30752553 ggtttggttcggttgacttttaaa-taaaattcaaaacaaaccaaatcaaaccaatgcggtttaggttgaatcgtttggtgcggttttttttcgagacaa 30752651  T
Q  137 tacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||| |||| | |||||||| |||||||  || |||| |||||||||    
T  30752652 tacaattttttgtttccaacttcaaaatcgagttaaaaaactaaaacataacatattt 30752709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 22413860 - 22413936
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| |||||||||||||| ||||| | | ||||  ||||||||||||||||   ||||||||||    
T  22413860 ggtttggttcggttgacttttaaaataaaatctgaacaaaaacaaacgaaaccaatgcggtttggaatggatcggtt 22413936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 13859357 - 13859268
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgacgataatttaa 221  Q
    ||||||||||||||||  ||| |||||  |||||| | |||||| |||||||||||||||||||  |||||| |||||||| ||| |||||    
T  13859357 agacaatacaattttta-tttccaacactaaaatcaagttaaaaggttataacacaacatattttcagcaatgtttccgacaatattttaa 13859268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 7170048 - 7169988
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 202  Q
    |||||| ||| |||| | |||||| ||||||||||||| |||||||||||||| |||||||    
T  7170048 tttttttttttcaacgttaaaatcaaattaaaaagttaaaacacaacatatttttagcaat 7169988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 7676324 - 7676260
Alignment:
Q  130 aagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||||||||||| |||  ||||| |||||||| |||||||| || || |||||||||||    
T  7676324 aagacaatacaattttttcttttaaacattaaaatcgagttaaaaaggtaaaatacaacatattt 7676260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 4577206 - 4577261
Alignment:
Q  140 aattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    |||||||| |||  ||||| |||||||| ||||||| |||||||||||||||||||    
T  4577206 aattttttatttttaacattaaaatcgagttaaaaacttataacacaacatatttc 4577261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 8064604 - 8064659
Alignment:
Q  135 aatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacat 190  Q
    ||||||||||||||||| |||||| |||||| | |||||||| || ||||||||||    
T  8064604 aatacaattttttgtttccaacattaaaatcaagttaaaaagctaaaacacaacat 8064659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 17306470 - 17306543
Alignment:
Q  133 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 207  Q
    ||||||||||||||||||| ||  || |||||| | ||||||||||| ||||| ||||| |||||||||| ||||    
T  17306470 acaatacaattttttgttt-cattattaaaatcaagttaaaaagttaaaacacgacatacttctagcaatgtttc 17306543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 31945513 - 31945459
Alignment:
Q  14 gaaccgaaagataaaaat-tatgcggtttggttcggttgatttttaaaataaaat 67  Q
    |||||| ||||||||||  |||||| |||||||||||||| ||||||||||||||    
T  31945513 gaaccgtaagataaaaaagtatgcgttttggttcggttgacttttaaaataaaat 31945459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 4562879 - 4562911
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaattt 69  Q
    |||||||||| ||||||||||||||||||||||    
T  4562879 ggtttggttcagttgatttttaaaataaaattt 4562911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 31945392 - 31945340
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| ||| || |||||| |||||||||| || ||||||||||||||    
T  31945392 ttttttgtttccaatattaaaatcaaattaaaaagctaaaacacaacatattt 31945340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 4785260 - 4785418
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaata 138  Q
    |||||||||||||| |||||||||| ||| ||||||| | |||| |||||||||||||||||| |||||| ||||||| | |          || ||||     
T  4785260 tttggttcggttgacttttaaaatataatatgaaccaaaccaaaccaaaccaatgcggtttgaattggattggttagtgcggtttttt----aggcaat- 4785354  T
Q  139 caattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaata 203  Q
     |||||||| ||| |||||| |||||| ||||||||||||| ||||||| |||||| ||||||||    
T  4785355 -aattttttttttccaacattaaaatcaaattaaaaagttaaaacacaatatatttttagcaata 4785418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 6591250 - 6591401
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    |||||||||||||||| |||||||||||||||  ||||| | |||| |||| ||||| |||||||||||||| |||| || | |          ||||||    
T  6591250 ggtttggttcggttgacttttaaaataaaattctaaccaaaccaaaccaaaacaatgtggtttgagttggattggttggtacggtttttttg--agacaa 6591347  T
Q  137 tacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacat 190  Q
    ||||||||||| ||| |||| | |||||||| |||||||| || ||||||||||    
T  6591348 tacaattttttatttccaactttaaaatcgagttaaaaagctaaaacacaacat 6591401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 6616945 - 6617096
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    |||||| ||||||||| |||||||||||||||  ||||| | |||| |||| ||||| ||||||||| |||| |||| || | |          ||||||    
T  6616945 ggtttgtttcggttgacttttaaaataaaattctaaccaaaccaaaccaaaacaatgtggtttgagtaggattggttggtacggtttttttg--agacaa 6617042  T
Q  137 tacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacat 190  Q
    ||||||||||||||| |||| | |||||||| |||||||| || ||||||||||    
T  6617043 tacaattttttgtttccaactttaaaatcgagttaaaaagctaaaacacaacat 6617096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 3129537 - 3129457
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||||| ||||||||||||| |||||| |||||||| |||||||  || |||| |||||||||  |||||| ||||||||    
T  3129537 agacaatgcaattttttgttttcaacattaaaatcgagttaaaaatctaaaacataacatattttcagcaatgtttccgac 3129457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 33565979 - 33566055
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| || |||||||||||| |||||| | |||| ||||||| ||||||||   |||||||||||    
T  33565979 ggtttggttcggttgacttctaaaataaaattcgaaccaaaccaaaccaaaccagtgcggttttgattggatcggtt 33566055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 40436459 - 40436530
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||| ||||||||||||||||     | || ||||||||||||||||| ||||||||||||    
T  40436459 ggtttggttcggttgactttaaaaataaaatttgaac-----cgaaccaaaccaatgcggtttgggttggatcggtt 40436530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 22811233 - 22811195
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaacca 75  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  22811233 ggtttggttcggttgacttttaaaataaaatttgaacca 22811195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 12074161 - 12074084
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttcc 208  Q
    ||||||||||||||||||||| |||||| |||||  | |||||| |  | ||||||||||||||| |||||| |||||    
T  12074161 agacaatacaattttttgtttccaacattaaaattaatttaaaatgcaaaaacacaacatatttcgagcaatgtttcc 12074084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 30254187 - 30254110
Alignment:
Q  36 cggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||||||||| ||| |||| | | ||||||||| | ||||  |||| |||||||||||| |||||||||||    
T  30254187 cggtttggttcggttgactttaaaaaaatattttgaaccaaaccaaacaaaactaatgcggtttgaattggatcggtt 30254110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 6649542 - 6649613
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggat 108  Q
    |||||||||| ||||| ||||||||||||||   || || | |||| |||| ||||||||||||||||||||    
T  6649542 ggtttggttcagttgacttttaaaataaaatcctaatcaaaacaaagcaaaacaatgcggtttgagttggat 6649613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 11218972 - 11219035
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttg 100  Q
    ||||||||| |||||| |||||||||||| | |||| || |||||| ||||||||||| |||||    
T  11218972 ggtttggtttggttgacttttaaaataaagtctgaatcaaatcaaaccaaaccaatgcagtttg 11219035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 12912604 - 12912675
Alignment:
Q  136 atacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 207  Q
    ||||| |||||||||| |||||| |||||| | ||||||  ||| ||||||||||||||| |||||| ||||    
T  12912604 atacagttttttgttttcaacattaaaatcaagttaaaacattaaaacacaacatatttccagcaatgtttc 12912675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 7428493 - 7428455
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaacca 75  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  7428493 ggtttggttcggttgacttttaaaataaaattcgaacca 7428455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 31497659 - 31497583
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||| ||||||| ||   ||||| | |||| ||||| ||||||||||| ||||||| ||||    
T  31497659 ggtttggttcggttgactttaaaaataacatccaaaccaaaccaaaccaaactaatgcggtttgggttggattggtt 31497583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 37162614 - 37162562
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||||| |||| | ||||||||||||| ||||||| ||||||    
T  37162614 ttttttgttttcaacattaaaaccaaattaaaaagttaaaacacaatatattt 37162562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 38926392 - 38926340
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||||| |||||| | |||||||| || ||||||||||||||    
T  38926392 ttttttgttttcaacattaaaatcaagttaaaaaggtaaaacacaacatattt 38926340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 44336795 - 44336866
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    |||||||||||||||| |||||||||| |||  |||||| | |||| |||||| ||| |||||| ||||||||    
T  44336795 ggtttggttcggttgacttttaaaatacaatccgaaccaaaccaaaccaaacctatgtggtttg-gttggatc 44336866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 25973 - 26037
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||| || |||||||||||||||    
T  25973 agacaatacaattttttgttttcaacattaaaatcgagttaaaaaggtaaaacacaacatatttc 26037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 14631 - 14694
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| || || |||||||||||    
T  14631 agacaatacaattttttgtttgcaacattaaaatcgagttaaaaaggtaaaatacaacatattt 14694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 48338451 - 48338515
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||| || |||||||||||||||    
T  48338451 agacaatacaattttttgttttcaacattaaaatcgagttaaaaaggtaaaacacaacatatttc 48338515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 29335179 - 29335108
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggat 108  Q
    ||||||||||||||| ||||||||||| ||| ||||||| | |||| ||||||||| |||||||||||||||    
T  29335179 ggtttggttcggttggtttttaaaatacaatatgaaccaaaccaaaccaaaccaatacggtttgagttggat 29335108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 20986444 - 20986520
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| || ||||||||||| ||||||| | |||| |||||||||||||||||  ||| |||||||    
T  20986444 ggtttggttcggttgacttataaaataaaatatgaaccaaaccaaaccaaaccaatgcggtttggattgaatcggtt 20986520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 189
Target Start/End: Complemental strand, 11031700 - 11031546
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcag--nnnnnnnncaagac 134  Q
    ||||||||| |||||| |||||||||||||| | |||||   ||||||||| ||||| |||||| |||||||||||| || | |           |||||    
T  11031700 ggtttggtttggttgacttttaaaataaaatcttaaccaacccaaatcaaatcaatgtggtttgggttggatcggttggtgcggcttttttttttaagac 11031601  T
Q  135 aatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaaca 189  Q
    ||||||||||||||||| |||||| |||||||| | |||||| ||||| ||||||    
T  11031600 aatacaattttttgttttcaacattaaaatcgagtcaaaaagctataatacaaca 11031546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 48293383 - 48293303
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||  || ||||| | ||||||| |||||| ||| ||||    
T  48293383 agacaatacaattttttgtttccaacattaaaatcgagttaaaaaagtaaaacacgaaatatttccagcaatgttttcgac 48293303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 17845008 - 17845087
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgacgataatttaa 221  Q
    |||||||||| |||||| ||||| || |||||||| |||| ||||||||||||||||| || ||| |||| ||| |||||    
T  17845008 ttttttgttttcaacattaaaattgagttaaaaaggtatagcacaacatatttctagccatgttttcgacaatattttaa 17845087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 49640951 - 49641014
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||| ||| |||||| |||||| | ||||| ||||| ||||||||||||||    
T  49640951 agacaatacaattttttttttccaacattaaaatcaagttaaagagttaaaacacaacatattt 49641014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 18881984 - 18881927
Alignment:
Q  164 tcgaattaaaaagttataacacaacatatttctagcaatatttccgacgataatttaa 221  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||| || ||| |||||    
T  18881984 tcgagttaaaaagctataacacaacatatttctagcaatgtttccaacaatattttaa 18881927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 32223288 - 32223231
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaac 188  Q
    ||||||||||||||||||||| |||||| |||||| | |||||||| || ||||||||    
T  32223288 agacaatacaattttttgtttccaacattaaaatctagttaaaaaggtaaaacacaac 32223231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 8484695 - 8484763
Alignment:
Q  44 ttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggt 112  Q
    ||||||||| |||||||||||||  ||||||| |  ||| |||||||||||||||||  ||||||||||    
T  8484695 ttcggttgacttttaaaataaaacatgaaccaaactaaaccaaaccaatgcggtttggattggatcggt 8484763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 19753579 - 19753527
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaa 91  Q
    |||||||||||||| ||||||||||||||| |||||| | |||| ||||||||    
T  19753579 tttggttcggttgacttttaaaataaaattcgaaccaaaccaaaccaaaccaa 19753527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 19786227 - 19786279
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaa 91  Q
    |||||||||||||| ||||||||||||||| |||||| | |||| ||||||||    
T  19786227 tttggttcggttgacttttaaaataaaattcgaaccaaaccaaaccaaaccaa 19786279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 21069068 - 21069144
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||| |||| |||||| ||||||||| ||||| |||||| | ||| ||||||||||||||||||  |||||| ||||    
T  21069068 ggttcggtttggttgacttttaaaattaaattcgaaccaaaccaactcaaaccaatgcggtttggattggattggtt 21069144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 26674224 - 26674280
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaa 187  Q
    ||||||||||||||||||||| |||| | |||||||| |||||||| || |||||||    
T  26674224 agacaatacaattttttgtttccaactttaaaatcgagttaaaaaggtaaaacacaa 26674280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 51907177 - 51907237
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacata 191  Q
    |||||||| |||||||||||| |||||| |||||| | |||||||| || |||||||||||    
T  51907177 agacaatataattttttgttttcaacattaaaatcaagttaaaaaggtaaaacacaacata 51907237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 5122355 - 5122292
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||||||||||||||  ||||| |||||| | ||||||||||  |||||||| |||||    
T  5122355 agacaatacaattttttgtttctaacattaaaatcaagttaaaaagttgaaacacaacctattt 5122292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 6101993 - 6102056
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||||||| |||||  |||||| | |||||| | || ||||||||||||||    
T  6101993 agacaatacaattttttgtttccaacagtaaaatcaagttaaaaggataaaacacaacatattt 6102056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 8312002 - 8312061
Alignment:
Q  135 aatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||| |||||| |||||| | |||||||| || ||||||||| ||||    
T  8312002 aatacaattttttgtttacaacattaaaatcaagttaaaaagctaaaacacaacaaattt 8312061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 15723905 - 15723980
Alignment:
Q  38 gtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||||||||| ||| ||||||| ||   ||||| | |||| ||||| ||||||||||| ||||||||||||    
T  15723905 gtttggttcggttgactttaaaaataacatccaaaccaaaccaaaccaaactaatgcggtttgggttggatcggtt 15723980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 18319540 - 18319477
Alignment:
Q  130 aagacaatacaattttttgtttgcaaca-tgaaaatcgaattaaaaagttataacacaacatat 192  Q
    ||||||||||||||||||||||  |||| | |||||| |||||||||| || ||||||||||||    
T  18319540 aagacaatacaattttttgtttttaacattaaaaatcaaattaaaaaggtagaacacaacatat 18319477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 18399141 - 18399204
Alignment:
Q  130 aagacaatacaattttttgtttgcaaca-tgaaaatcgaattaaaaagttataacacaacatat 192  Q
    ||||||||||||||||||||||  |||| | |||||| |||||||||| || ||||||||||||    
T  18399141 aagacaatacaattttttgtttttaacattaaaaatcaaattaaaaaggtagaacacaacatat 18399204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 23625960 - 23625885
Alignment:
Q  38 gtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||| |||| |||||||||||||| |||| ||   |||| |||| ||||||||||||  |||||||||||    
T  23625960 gtttggttcgcttgacttttaaaataaaatctgaatcaacccaaaccaaatcaatgcggtttggattggatcggtt 23625885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 42198784 - 42198873
Alignment:
Q  15 aaccgaaagataaaaattatgcggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    ||||| ||||||||||  ||||||||| |||  ||||| |||||||||||||| |||||||     || ||||| |||| |||||||||||||||    
T  42198784 aaccgcaagataaaaaacatgcggttttgttttgttgacttttaaaataaaatctgaacca-----aaccaaactaatgtggtttgagttggatc 42198873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 21069171 - 21069224
Alignment:
Q  141 attttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||| |||||| |||||| |||||||||| || ||||| ||||||||    
T  21069171 attttttgttttcaacattaaaatcaaattaaaaagctaaaacactacatattt 21069224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 45983500 - 45983565
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttct-agcaatattt 206  Q
    |||||||||| |||||| ||||||   ||||||||||| |||||||||||||| | ||||||||||    
T  45983500 ttttttgtttccaacattaaaatcaggttaaaaagttaaaacacaacatatttttcagcaatattt 45983565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 48602495 - 48602434
Alignment:
Q  133 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||||| |||||| |||||| |||||  | ||||||||||| |||| |||||||||    
T  48602495 acaatacaatttgttgttttcaacattaaaattaagttaaaaagttaaaacaaaacatattt 48602434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 48684892 - 48684945
Alignment:
Q  134 caatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaa 187  Q
    |||||||||||||| ||| |||||| |||||| |||||||||| || |||||||    
T  48684892 caatacaattttttatttccaacattaaaatcaaattaaaaagctaaaacacaa 48684945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 23120213 - 23120161
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||||| ||||||   ||||||||||| ||||||||||||||    
T  23120213 ttttttgtttccaacattaaaatcaggttaaaaagttaaaacacaacatattt 23120161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 42198904 - 42198956
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| |||||| ||||||   ||||||||||| ||||||||||||||    
T  42198904 ttttttgttttcaacattaaaatcatgttaaaaagttaaaacacaacatattt 42198956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 28790620 - 28790680
Alignment:
Q  135 aatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    ||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||||    
T  28790620 aatacaattttttgtttccaacattaaaatcgagttaaaaagctataacacaacatatttc 28790680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 30759708 - 30759632
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||| ||||||||  |||||||||||||||||||||| | |||| ||||||||||||||||| ||| ||||||||    
T  30759708 ggtttgattcggttggcttttaaaataaaatttgaaccaaaccaaaccaaaccaatgcggtttgtgttagatcggtt 30759632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 1331115 - 1331194
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||||||||||||||||||| |||||| |||||||| || ||||| || ||||||||||||||  |||||||||| ||||    
T  1331115 agacaatacaattttttgtttccaacattaaaatcgagtt-aaaaggtaaaacacaacatattttcagcaatattttcgac 1331194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 5862691 - 5862615
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||||||||||||||  |||||| | |||||||||||||| |||||||  ||| |||||||    
T  5862691 ggtttggttcggttgacttttaaaataaaatccgaaccaaaccaaatcaaaccaatacggtttggattgaatcggtt 5862615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 13193921 - 13194053
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    |||||||||||||||| ||||||||||||||  ||||     |||||||||||||||| ||||| |||||||||||| || | |        ||||| ||    
T  13193921 ggtttggttcggttgacttttaaaataaaatccgaac-----caaatcaaaccaatgcagtttgggttggatcggttggtacgg--ttttttcaagataa 13194013  T
Q  137 tacaattttttgtttgcaacatgaaaatcgaattaaaaag 176  Q
    ||||||||||||||| |||||| ||||| || ||||||||    
T  13194014 tacaattttttgttttcaacattaaaattgagttaaaaag 13194053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 17762852 - 17762933
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaa-tcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||||||||||||||||||| |||||| |||| | || |||||||| |||||| ||||||||||  |||||| ||||||||    
T  17762852 agacaatacaattttttgtttccaacattaaaatttgagttaaaaagctataacgcaacatattttcagcaatgtttccgac 17762933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 31720049 - 31719988
Alignment:
Q  133 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| || |||| |||||||||    
T  31720049 acaatacaattttttgtttccaacattaaaatcgagttaaaaaggtaaaacaaaacatattt 31719988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 6946523 - 6946459
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    ||||||||||||||||||||| |||||| |||||| | |||||||| || |||||||| ||||||    
T  6946523 agacaatacaattttttgtttccaacattaaaatcaagttaaaaaggtaaaacacaacttatttc 6946459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 27301457 - 27301394
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||||||||||||||||||| ||| || |||||||| |||||||| || ||||||| ||||||    
T  27301457 agacaatacaattttttgtttccaaaattaaaatcgagttaaaaaggtaaaacacaaaatattt 27301394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 12041562 - 12041492
Alignment:
Q  137 tacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 207  Q
    ||||||||||| ||| |||||| |||||||| |||||||| || || |||||||||||| |||||| ||||    
T  12041562 tacaattttttatttacaacattaaaatcgagttaaaaaggtaaaatacaacatatttccagcaatgtttc 12041492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 30761714 - 30761661
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    |||||| ||| |||||| |||||||| |||||||||||||||| ||||||||||    
T  30761714 ttttttatttccaacattaaaatcgagttaaaaagttataacataacatatttc 30761661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 41461104 - 41461175
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||||||||||||||| ||||||     || |||||||||||||||||  ||| |||||||    
T  41461104 ggtttggttcggttgacttttaaaataaaattcgaacca-----aaccaaaccaatgcggtttggattgaatcggtt 41461175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 12841537 - 12841636
Alignment:
Q  12 atgaaccgaaagataaaaatt-atgcggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcg 110  Q
    ||||| || |||||||||||  ||||||||||||| |||||| |||||||||| |||  |||||  | |||| |||| |||||||||||| ||| |||||    
T  12841537 atgaatcgtaagataaaaatgcatgcggtttggtttggttgaattttaaaatacaatccgaaccgaaccaaaccaaatcaatgcggtttgggtttgatcg 12841636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 27301544 - 27301486
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttg 100  Q
    |||||| ||||||||| ||||||||||||||||||||||     || |||||||||||||||||    
T  27301544 ggtttgattcggttgacttttaaaataaaatttgaacca-----aaccaaaccaatgcggtttg 27301486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 12884537 - 12884579
Alignment:
Q  26 aaaaattatgcggtttggttcggttgatttttaaaataaaatt 68  Q
    ||||| |||||||||||||| |||||| |||||||||||||||    
T  12884537 aaaaagtatgcggtttggtttggttgacttttaaaataaaatt 12884579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 44085546 - 44085578
Alignment:
Q  81 aatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||||||| ||||||||||||    
T  44085546 aatcaaaccaatgcggtttgggttggatcggtt 44085578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 23475172 - 23475109
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttg 100  Q
    ||||||||||||||||||||||||||||||||||||| | | |||| ||||| |||||||||||    
T  23475172 ggtttggttcggttgatttttaaaataaaatttgaacaaaaccaaaccaaactaatgcggtttg 23475109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 47984475 - 47984393
Alignment:
Q  129 caagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    |||||||| |||||||||||||| | |||| |||||||| |||||||| || |||||||||| ||||  ||||||||||||||    
T  47984475 caagacaacacaattttttgttttcgacattaaaatcgagttaaaaaggtaaaacacaacatgtttcctgcaatatttccgac 47984393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 8165611 - 8165534
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtta 114  Q
    |||| ||||||||||| ||| |||||||||| ||||||| | |||| ||||| ||||||||||| |||||||||||||    
T  8165611 ggttcggttcggttgactttaaaaataaaatctgaaccaaaccaaaccaaacaaatgcggtttgggttggatcggtta 8165534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 8268751 - 8268831
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||||| ||||||||||||| |||||| |||||| | |||||||| || ||||||||||||||| || ||| ||||||||    
T  8268751 agacaatgcaattttttgtttacaacattaaaatcaagttaaaaagctaaaacacaacatatttccagtaatgtttccgac 8268831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 10847504 - 10847424
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||||||||||||||||||| |||||| ||||   ||||||||||||| ||||||||||||||  | |||| ||||||||    
T  10847504 agacaatacaattttttgtttccaacattaaaacaaaattaaaaagttaaaacacaacatattttcaacaatgtttccgac 10847424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 211
Target Start/End: Complemental strand, 36203501 - 36203329
Alignment:
Q  39 tttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaata 138  Q
    |||||||||||||| |||||||||| |||  |||||  | |||| ||||| ||||||||||| ||||||| |||| || |||        | |||||||     
T  36203501 tttggttcggttgacttttaaaatacaatccgaaccgaaccaaaccaaactaatgcggtttgggttggattggttggtgcagttttttttcgagacaatg 36203402  T
Q  139 caattttttgtttgcaacatgaaaatcgaattaaaaa-gttataacacaacatatttctagcaatatttccgac 211  Q
     |||||||||||| ||||||  ||||||| ||||||| || | ||||||||||||||  || ||||||||||||    
T  36203401 gaattttttgtttccaacat-taaatcgagttaaaaacgtaaaaacacaacatattttcagtaatatttccgac 36203329  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 11074459 - 11074383
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||| |||||||||| ||||||  | |||| |||| ||||||||||||  |||||||||||    
T  11074459 ggtttggttcggttgactttaaaaataaaatctgaacctaaccaaaccaaatcaatgcggtttggattggatcggtt 11074383  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 15882126 - 15882063
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||| |||||||||||||| ||||||  ||||| |||||||||| || ||||||||||||||    
T  15882126 agacaacacaattttttgttttcaacatttaaatcaaattaaaaagataaaacacaacatattt 15882063  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 25560085 - 25559984
Alignment:
Q  14 gaaccgaaagataaaaat-tatgcggtttgg--ttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcg 110  Q
    |||||| ||||||||||  ||||||||||||  ||||||||| |||||||||||| |  |||||| | ||||  ||||||||||||||||| ||||||||    
T  25560085 gaaccgtaagataaaaaagtatgcggtttggggttcggttgacttttaaaataaa-tccgaaccaaaccaaacaaaaccaatgcggtttgaattggatcg 25559987  T
Q  111 gtt 113  Q
    |||    
T  25559986 gtt 25559984  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 26345117 - 26345042
Alignment:
Q  38 gtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||| ||||||||| ||||||||||||||  |||||| |  ||| |||||||||||||||||  |||||||||||    
T  26345117 gtttgattcggttgacttttaaaataaaatccgaaccaaacaaaaccaaaccaatgcggtttggattggatcggtt 26345042  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 32910341 - 32910278
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||| |||||||||||||||| |||||| |||||| | ||||||||||  ||||||||||||||    
T  32910341 agacgatacaattttttgtttccaacattaaaatcaagttaaaaagtttaaacacaacatattt 32910278  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 6694332 - 6694282
Alignment:
Q  144 ttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||| |||||| |||||| ||||||||||||| ||||||||||||||    
T  6694332 ttttgtttccaacattaaaatcaaattaaaaagttaaaacacaacatattt 6694282  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 12973688 - 12973745
Alignment:
Q  145 tttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaat 202  Q
    ||||||| |||||| |||||| ||||||||||||| ||| |||||||||| |||||||    
T  12973688 tttgtttacaacattaaaatcaaattaaaaagttaaaacgcaacatatttttagcaat 12973745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 15880123 - 15880047
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttc 207  Q
    |||||| |||||||||||||| |||||| |||||| | |||||||| || | ||||||||||||  |||||| ||||    
T  15880123 agacaacacaattttttgtttccaacattaaaatcaagttaaaaaggtaaatcacaacatattttcagcaatgtttc 15880047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 26345014 - 26344962
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    ||||| |||| |||||| |||||| ||||||||||||| ||||||||||||||    
T  26345014 tttttggtttccaacattaaaatcaaattaaaaagttaaaacacaacatattt 26344962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 27350681 - 27350741
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggt 97  Q
    ||||||||||  |||| ||||||||||||||| |||| | |||||| ||||||||||||||    
T  27350681 ggtttggttcaattgacttttaaaataaaattcgaacaaaatcaaaccaaaccaatgcggt 27350741  T

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Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 35980250 - 35980170
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    ||||||||||||||||||||| |||||| |||||| | |||||||| || || || ||||||||  |||||| ||| ||||    
T  35980250 agacaatacaattttttgtttccaacattaaaatcaagttaaaaaggtaaaaaacgacatattttcagcaatgttttcgac 35980170  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 17651868 - 17651911
Alignment:
Q  133 acaatacaattttttgtttgcaacatgaaaatcgaattaaaaag 176  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||    
T  17651868 acaatacaattttttgtttccaacattaaaatcgagttaaaaag 17651911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 17989162 - 17989225
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||| || ||||||||| |||||| ||||| || |||||||| || ||||||||||||||    
T  17989162 agacaatagaaatttttgttttcaacattaaaatggagttaaaaaggtaaaacacaacatattt 17989225  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 19051216 - 19051280
Alignment:
Q  129 caagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatattt 194  Q
    |||||||||| | ||||| |||| |||||| |||||| | ||||||||||| ||||||||||||||    
T  19051216 caagacaata-actttttcgttttcaacattaaaatcaagttaaaaagttaaaacacaacatattt 19051280  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 24630070 - 24630151
Alignment:
Q  130 aagacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttctagcaatatttccgac 211  Q
    |||||||||||||||||| ||| |||||| |||||||| | |||||| ||||| ||| || ||||  | |||| ||||||||    
T  24630070 aagacaatacaattttttattttcaacattaaaatcgagtcaaaaagctataatacagcacatttacaacaatgtttccgac 24630151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 40095474 - 40095405
Alignment:
Q  44 ttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||| ||||||||||||||| |  ||||| | |||| |||||||||| ||||||  |||||||||||    
T  40095474 ttcggtttatttttaaaataaaactcaaaccaaaccaaaccaaaccaatgtggtttggattggatcggtt 40095405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 52828937 - 52828990
Alignment:
Q  142 ttttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacatatttc 195  Q
    |||||||||| |||||| |||| ||| ||||| || ||||||||||||||||||    
T  52828937 ttttttgtttacaacattaaaaccgagttaaatagctataacacaacatatttc 52828990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 12973582 - 12973658
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    ||||||||| |||||||||| ||||||||||  ||| || | |||| ||||| |||| ||||||  |||||||||||    
T  12973582 ggtttggtttggttgattttgaaaataaaatccgaatcaaaccaaaccaaactaatgtggtttggattggatcggtt 12973658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 16529560 - 16529484
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||||||||||||    |||  ||||| | |||| ||||||||||||| |||| |||| ||||||    
T  16529560 ggtttggttcggttgatttttaaaaagtcattcaaaccaaaccaaaccaaaccaatgcggcttgaattggttcggtt 16529484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 32910429 - 32910358
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggtt 113  Q
    |||||||||||||||| ||| |||||| ||| |||||||     || ||||| ||||||||||| ||||||||||||    
T  32910429 ggtttggttcggttgactttaaaaatagaatctgaacca-----aaacaaacaaatgcggtttgtgttggatcggtt 32910358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 39158383 - 39158311
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatc 109  Q
    ||||| ||||||| |  |||||||||||||| |||| || | |||| |||||||||| |||||| ||||||||    
T  39158383 ggtttagttcggtcggcttttaaaataaaatctgaatcaaaccaaaccaaaccaatgtggtttgggttggatc 39158311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 44918561 - 44918589
Alignment:
Q  33 atgcggtttggttcggttgatttttaaaa 61  Q
    |||||||||||||||||||||||||||||    
T  44918561 atgcggtttggttcggttgatttttaaaa 44918589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 6263 - 6414
Alignment:
Q  37 ggtttggttcggttgatttttaaaataaaatttgaaccacatcaaatcaaaccaatgcggtttgagttggatcggttagttcagnnnnnnnncaagacaa 136  Q
    |||||| ||||||||| |||||||||||||||  ||||| | |||| |||| ||||| ||||||||| |||| |||| || | |          ||||||    
T  6263 ggtttgattcggttgacttttaaaataaaattctaaccaaaccaaaccaaaacaatgtggtttgagtaggattggttggtacggtttttttg--agacaa 6360  T
Q  137 tacaattttttgtttgcaacatgaaaatcgaattaaaaagttataacacaacat 190  Q
    ||||||||||||||| |||| | |||||||| |||||||| || ||||||||||    
T  6361 tacaattttttgtttccaactttaaaatcgagttaaaaagctaaaacacaacat 6414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 241168 - 241120
Alignment:
Q  131 agacaatacaattttttgtttgcaacatgaaaatcgaattaaaaagtta 179  Q
    ||||||||||||| ||||||| |||||| ||||| ||||||||||||||    
T  241168 agacaatacaattatttgtttccaacattaaaatagaattaaaaagtta 241120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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