View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_111 (Length: 267)
Name: NF1107_low_111
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_111 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 46762795 - 46762561
Alignment:
| Q |
27 |
cttcatacacctccctagcaagtttctacaactcccaagccagtttctgatatttcagtgatattttgagttaagaaacaagaccaagttcatttgtttc |
126 |
Q |
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| T |
46762795 |
cttcatacacctccctagcaagtttctacaactcccaagccagtttctgatatttcagtgatattttgagttaagaaacaagaccaagttcatttgtttc |
46762696 |
T |
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| Q |
127 |
cttgttttcttcttgtaagtgctatgtatgatcttgctatactataatatttaaaagtgtactaagaagaaga---agaatgaagcaaattcccataaat |
223 |
Q |
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| T |
46762695 |
cttgttatcttcttgtaagtgctatgtatgatcttgctatactataatatttaaaagtgtactaagaagaagaagaagaatgaagcaaattcccataaat |
46762596 |
T |
|
| Q |
224 |
aagagagagaacaagaatagcactttaagaataat |
258 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
46762595 |
aagagagagaacaagaatagcactttaagaataat |
46762561 |
T |
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