View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_113 (Length: 266)
Name: NF1107_low_113
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_113 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 31201496 - 31201269
Alignment:
| Q |
30 |
gcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtat |
129 |
Q |
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| T |
31201496 |
gcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtat |
31201397 |
T |
|
| Q |
130 |
gagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcactgtatgcctcgtaagcattgctgaagaatctggctccaattag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201396 |
gagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcattgtatgcctcgtaagcattgctgaagaatctggctccaattag |
31201297 |
T |
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| Q |
230 |
cttcctgtttatatataacaagaataat |
257 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
31201296 |
cttcctgtttatatataacaagaataat |
31201269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 31063672 - 31063878
Alignment:
| Q |
30 |
gcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtat |
129 |
Q |
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||||| ||||||||||| ||||| ||||||| |||||||| ||||| ||||| |||||| ||||||| |||||||| || ||||||||||| |||| |
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| T |
31063672 |
gcaactctagctcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtat |
31063771 |
T |
|
| Q |
130 |
gagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcactgtatgcctcgtaagcattgctgaagaatctggctccaattag |
229 |
Q |
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| T |
31063772 |
gagtaccgtgacctacaaagtcacgtgctgtacgctgcgatgtgggaagtttgccattatatcgctcataagcatcgctgaaaaatctggctccaattag |
31063871 |
T |
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| Q |
230 |
cttcctg |
236 |
Q |
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||||||| |
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| T |
31063872 |
cttcctg |
31063878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 31051232 - 31051346
Alignment:
| Q |
43 |
ttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtggcc |
142 |
Q |
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|||| ||||||||||| | ||||||||||| ||| |||||| |||||| ||||||| |||||||| |||||||||||||| || |||||||| ||||| |
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| T |
31051232 |
ttggtgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggcc |
31051331 |
T |
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| Q |
143 |
taaaaagtcgcgtgc |
157 |
Q |
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| T |
31051332 |
gtaaaagtcacgtgc |
31051346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 31108759 - 31108871
Alignment:
| Q |
30 |
gcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtat |
129 |
Q |
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||||| ||||||||||| ||||| ||||||| |||||||| ||||| ||||| |||||| ||||||| || ||||| |||||||||||||| || | |
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| T |
31108759 |
gcaactctagctcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaaatttccaccagctgttgatagtgtgt |
31108858 |
T |
|
| Q |
130 |
gagtaccgtggcc |
142 |
Q |
| |
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||||||| ||||| |
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| T |
31108859 |
gagtaccatggcc |
31108871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 31146520 - 31146630
Alignment:
| Q |
41 |
tcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtgg |
140 |
Q |
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|||||| ||||||||||||| ||||| ||||||||| |||||| |||| | | |||| |||||||| || ||||||||||| || || || || ||| |
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| T |
31146520 |
tcttggtgaaccaccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatgg |
31146619 |
T |
|
| Q |
141 |
cctaaaaagtc |
151 |
Q |
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|||| |||||| |
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| T |
31146620 |
cctacaaagtc |
31146630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 31164346 - 31164456
Alignment:
| Q |
41 |
tcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtgg |
140 |
Q |
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|||||| ||||||||||||| ||||| ||||||||| |||||| |||| | | |||| |||||||| || ||||||||||| || || || || ||| |
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| T |
31164346 |
tcttggtgaaccaccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatgg |
31164445 |
T |
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| Q |
141 |
cctaaaaagtc |
151 |
Q |
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|||| |||||| |
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| T |
31164446 |
cctacaaagtc |
31164456 |
T |
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