View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_119 (Length: 251)
Name: NF1107_low_119
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_119 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 26458799 - 26458921
Alignment:
| Q |
111 |
tcttagcaaaggacttgttgtgaagcattgtgacggtggattgaaacgagatatcttagttgaatgaaattgagcttcgaagtggaagggatgaaattca |
210 |
Q |
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| T |
26458799 |
tcttaacaaaggacttgttgtgaagcattgtgacggtggattgaaacgagatatcttagttgaatgaaattgagcttcgaagtggaagggatgaaattca |
26458898 |
T |
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| Q |
211 |
aggagacgcgctggttcgttcca |
233 |
Q |
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| T |
26458899 |
aggagccgcgctggttcgttcca |
26458921 |
T |
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Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 26458469 - 26458576
Alignment:
| Q |
1 |
caacatatcctatcgaaatcaaaagcgcgggtataaaagccggaagtgcgcgaataagaaaaccaggagggggcattttactcttggtctgttcagaact |
100 |
Q |
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| T |
26458469 |
caacatatcctatcgaaatcaaaagcgcgggtataaaagccggaagtgcgcgaataagaaaaccaggagggggcattttactcttggtctgttcagaact |
26458568 |
T |
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| Q |
101 |
caattgct |
108 |
Q |
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| T |
26458569 |
caattgct |
26458576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15037 - 14965
Alignment:
| Q |
1 |
caacatatcctatcgaaatcaaaagcgcgggtataaaagccggaagtgcgcgaataagaaaaccaggaggggg |
73 |
Q |
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| T |
15037 |
caacatatcctatcgaaatcaaaagcgcgggtataacagccggaagtgcgcgaataagaaaaccaggaggggg |
14965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 30968405 - 30968489
Alignment:
| Q |
119 |
aaggacttgttgtgaagcattgtgacggtggattgaaacgagatatcttagttgaatgaaattgagcttcgaagtggaagggatga |
204 |
Q |
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| T |
30968405 |
aaggacttgttgtgaagcattttgacggtgaattcaaacgagatatcttagttg-ttgaaattgagcttcgaagtggaagtgatga |
30968489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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