View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_121 (Length: 251)
Name: NF1107_low_121
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_121 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 25706197 - 25706357
Alignment:
| Q |
1 |
ttgtgtttgcaggtgattcagtgggcagaaaccaatgggagtcattagttagcatgttgtcaaaagaggtcactaacctctcaaaaatatatgaagtgaa |
100 |
Q |
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| T |
25706197 |
ttgtgtttgcaggtgattcagtgggcagaaaccaatgggagtcattactttgcatgctatcaaaaggggtctctaacctctcaaaaatatatgaagtgaa |
25706296 |
T |
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| Q |
101 |
tggtagtcccataagcaaacacaagggctacttggtgatgaaatttgaggaatacaacatg |
161 |
Q |
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| T |
25706297 |
tggaaatcccataagcaaacacaagggctacttggtgatgaaatttgaggaatacaacatg |
25706357 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 9711795 - 9711828
Alignment:
| Q |
128 |
ctacttggtgatgaaatttgaggaatacaacatg |
161 |
Q |
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| T |
9711795 |
ctacttggtgatgaaatttgaggaatacaacatg |
9711828 |
T |
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