View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_130 (Length: 243)
Name: NF1107_low_130
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_130 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 33679023 - 33679239
Alignment:
| Q |
28 |
gaatttcaatatttt-tccaacctttcaaactattcaacttgatcgccaaggtaaaactagattgaatatcccactaattaaaaattcaaataaggaaag |
126 |
Q |
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| T |
33679023 |
gaatttcaatattttttccaacctttcaaactattcaacttgatcgccaaggtaaaactagattgaatatcccactaattaaaaattcaaataaggaaag |
33679122 |
T |
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| Q |
127 |
agaattttcattcttttataaatacctaagtatagtagtaaatgcaaagataggtccaaccctaaactctaaa--ctctctatcaatctattatcaatcc |
224 |
Q |
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| T |
33679123 |
agaattttcattcttttataaatacctaagtatagtagtaaatgcaaagataggtccaaccctaaactctaaactctctctatcaatctataatcaatcc |
33679222 |
T |
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| Q |
225 |
tacagttagatattcat |
241 |
Q |
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||||||||||||||||| |
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| T |
33679223 |
tacagttagatattcat |
33679239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 33686472 - 33686701
Alignment:
| Q |
28 |
gaatttcaatattttt-ccaacctttcaaactattcaa-----cttgatcgccaaggtaaaactagattgaatatcccactaattaaaaattcaaataag |
121 |
Q |
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|||||||||||||||| ||||||||||| || |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |
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| T |
33686472 |
gaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatactagattgaatatcccactagttaaaaattcaaaaaag |
33686571 |
T |
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| Q |
122 |
gaaagagaattttcattcttttataaatacctaa-gta---------tagtagtaaatgcaaagatag--gtccaaccctaaactctaaactctctatca |
209 |
Q |
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| T |
33686572 |
gaaagagaattttcattcttttataaatacctaacgcaccccataagtagtagtaaatgcaaagataggtgtccaaccctaaactctaaactctc--cca |
33686669 |
T |
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| Q |
210 |
atctattatcaatcctacagttagatattcat |
241 |
Q |
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|| ||||||||||| |||| |||||||||||| |
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| T |
33686670 |
atttattatcaatcatacatttagatattcat |
33686701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 33703526 - 33703755
Alignment:
| Q |
28 |
gaatttcaatattttt-ccaacctttcaaactattcaa-----cttgatcgccaaggtaaaactagattgaatatcccactaattaaaaattcaaataag |
121 |
Q |
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|||||||||||||||| ||||||||||| || |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |
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| T |
33703526 |
gaatttcaatattttttccaacctttcataccattcaaattcacttgatcgccaaggtaatactagattgaatatcccactagttaaaaattcaaaaaag |
33703625 |
T |
|
| Q |
122 |
gaaagagaattttcattcttttataaatacctaa-gta---------tagtagtaaatgcaaagatag--gtccaaccctaaactctaaactctctatca |
209 |
Q |
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|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
33703626 |
gaaagagaattttcattcttttataaatacctaacgcaccccataagtagtagtaaatgcaaagataggtgtccaaccctaaactctaaactctc--cca |
33703723 |
T |
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| Q |
210 |
atctattatcaatcctacagttagatattcat |
241 |
Q |
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|| ||||||||||| |||| |||||||||||| |
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| T |
33703724 |
atttattatcaatcatacatttagatattcat |
33703755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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