View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_133 (Length: 223)
Name: NF1107_low_133
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_133 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 9452810 - 9453007
Alignment:
| Q |
8 |
atagtacataaattagatttggttagataaataaaactttgtcaaaa-aacaatttaagatggcagagatattttataagaaaaatgctagataccgcga |
106 |
Q |
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| T |
9452810 |
atagtacataaattagatttggttagaaaaataaaactttgtcaaaaaaacaatttgagatggcaaagatattttataagaaaaatgctagataccgcga |
9452909 |
T |
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| Q |
107 |
gaggatttttcacaaaagcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaattcaccgcttcatcttaaaagagcaaca |
204 |
Q |
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| T |
9452910 |
gaggatttttcacgaaagcttctagaatgagatggcaacacaccatccattagatcttatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 46424083 - 46424194
Alignment:
| Q |
86 |
gaaaaatgctagataccgcgagaggatttttcacaaaagcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaattcaccgct |
185 |
Q |
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|||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46424083 |
gaaaaatgctagatacagcaagagggtttttcacgaaagc-------atgagttgacaacacaccatccattggatcttatatttaatgaattcatcgct |
46424175 |
T |
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| Q |
186 |
tcatcttaaaagagcaaca |
204 |
Q |
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| T |
46424176 |
tcatcttaaaagagcaaca |
46424194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 21546665 - 21546588
Alignment:
| Q |
8 |
atagtacataaattagatttggttagataaataaaactttgtcaaaaaacaatttaagatggcagagatattttataa |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||| |
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| T |
21546665 |
atagtacataaattagatttggttagataaataaaactttgtcaaaaaacaatttgatatgacaaagatattttataa |
21546588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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