View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_19 (Length: 464)
Name: NF1107_low_19
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 453
Target Start/End: Complemental strand, 45107097 - 45106675
Alignment:
| Q |
30 |
gatggaacaaaacataatcataattggatatttatgttctgaaacctattcctaaactgaaaacaaatgtcaaaattttaaatatattttactttccttt |
129 |
Q |
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| T |
45107097 |
gatggaacgaaacataatcataattggatatttatgttctgaa-cctattcctaaactgaaaacaaatgtcaa--ttttaaatatattttactttccttt |
45107001 |
T |
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| Q |
130 |
aaactgaatcccacatttcaaatttttacataaaaaagttgcataggtttatatatttaataactatttctataacgattattttgtaatactgatata- |
228 |
Q |
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| T |
45107000 |
aaactgaatcccacatttcaaatttttacataaaaaagttgcataggtttatatatctaataactatttctataacgattattttgtaatactgatatat |
45106901 |
T |
|
| Q |
229 |
-tataagtcctttctcttacaaaacttatacaagtttttctcgattattttagattaaaaagatggtgttcaagttcattcacaattttcttgattaatt |
327 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45106900 |
atataattcctttctcttacaaaacttatacaagtttttctcgattattttggattaaaaagatggtgttcaagttcattcacaattttcttcattaatt |
45106801 |
T |
|
| Q |
328 |
tgttacatnnnnnnnnnnnnnnnnnngcctgcttgatacactagtacggatcggttttgctggttctcaactcctcatattcagaagcacttgctgtagg |
427 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45106800 |
tgttacataaaaaaagaaagaaaaaagcctgcttgatacactagtacggatcggttttgctggttctcaactcctcatattcagaagcacttgctgtagg |
45106701 |
T |
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| Q |
428 |
gttttcaccagatcattcaccttcat |
453 |
Q |
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|||||||||||||||||||||||||| |
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| T |
45106700 |
gttttcaccagatcattcaccttcat |
45106675 |
T |
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