View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_low_20 (Length: 463)

Name: NF1107_low_20
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_low_20
NF1107_low_20
[»] chr5 (2 HSPs)
chr5 (104-432)||(7958491-7958820)
chr5 (8-426)||(11992635-11993052)
[»] chr4 (5 HSPs)
chr4 (3-425)||(27432633-27433056)
chr4 (243-434)||(7855696-7855886)
chr4 (166-246)||(9243359-9243439)
chr4 (170-231)||(13961173-13961234)
chr4 (27-87)||(7855524-7855583)
[»] chr2 (4 HSPs)
chr2 (104-432)||(10422841-10423171)
chr2 (8-216)||(20480481-20480687)
chr2 (272-344)||(20481156-20481228)
chr2 (3-43)||(10423195-10423235)
[»] chr7 (11 HSPs)
chr7 (167-397)||(49003867-49004098)
chr7 (168-434)||(8270950-8271214)
chr7 (280-428)||(11671350-11671498)
chr7 (166-234)||(11669737-11669805)
chr7 (323-434)||(7629471-7629582)
chr7 (3-87)||(8271309-8271392)
chr7 (375-434)||(8650635-8650694)
chr7 (100-191)||(15089760-15089851)
chr7 (272-347)||(8650547-8650622)
chr7 (8-67)||(11669615-11669674)
chr7 (100-137)||(8271255-8271292)
[»] chr3 (6 HSPs)
chr3 (102-434)||(18192962-18193292)
chr3 (194-434)||(19277622-19277851)
chr3 (277-434)||(21086514-21086671)
chr3 (166-246)||(27082066-27082146)
chr3 (31-86)||(27263890-27263945)
chr3 (100-151)||(27080924-27080975)
[»] scaffold0753 (1 HSPs)
scaffold0753 (166-246)||(3563-3643)
[»] chr1 (3 HSPs)
chr1 (8-49)||(2015917-2015958)
chr1 (375-434)||(2015194-2015253)
chr1 (277-335)||(2015278-2015336)
[»] scaffold0008 (1 HSPs)
scaffold0008 (179-236)||(53496-53553)
[»] chr6 (1 HSPs)
chr6 (168-216)||(20471471-20471519)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 104 - 432
Target Start/End: Original strand, 7958491 - 7958820
Alignment:
Q  104 aattgacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnnagcaattaacttcttcatacgagtatgaactcacttaa 203  Q
    |||||| ||||||||| | |||||||||||| ||||||||||| |||  ||| |        |||||||||||||| ||||||||||| |||||||||||    
T  7958491 aattgaaaagcacttcccctataatataacacggtttaaacttcgttcattctattttttttagcaattaacttctccatacgagtataaactcacttaa 7958590  T
Q  204 tttt-cgaccatttcttctttccatttttcacttagatgattttcccaacttattgttcctcaaataaggtggttttatttttaaactctaatgtaataa 302  Q
    |||| ||||||||| |||||||||||||||||||   |||||||| |||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||    
T  7958591 tttttcgaccattttttctttccatttttcactttagtgattttctcaacttattgttcctcaattaaggtgatttaatttttaaactctaatataataa 7958690  T
Q  303 agcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttctata 402  Q
    | |||||||||| ||||||||||| |||||||||||||||  |||||| ||||||| |||||||||||||||||||||||||||  ||||||||| | ||    
T  7958691 aacggatatatcaaagattattttcttttcattgatcaactgcaatgtccatccactaaaattcttctcatttctatattctctcctgatctcttatgta 7958790  T
Q  403 attgttgatgtttgattctatttggtggta 432  Q
    ||||  ||||||||||||||||||| ||||    
T  7958791 attgccgatgtttgattctatttggcggta 7958820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 8 - 426
Target Start/End: Original strand, 11992635 - 11993052
Alignment:
Q  8 aaattatactaaccccccttaaggtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctcccnnnnnnnnnnnnatcaaatt 107  Q
    |||||| ||||||| ||||||||||||||||||| ||||||| | | |  ||||||||||| ||||||||||||| ||||             |||||||    
T  11992635 aaattacactaacctcccttaaggtcttcttaaaaaacacaatcactctttctatttttttaactaaacattaatatcccttattttctg---tcaaatt 11992731  T
Q  108 gacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnn-agcaattaacttcttcatacgagtatgaactcacttaattt 206  Q
    |||||||||||  |||||||| ||| | |||||||||||||||| |||||         |||||||||||||||||||||||||||||||||||||||||    
T  11992732 gacaagcacttgccttataatttaatacggtttaaactttgttaattccatttttcttgagcaattaacttcttcatacgagtatgaactcacttaattt 11992831  T
Q  207 tcgaccatttcttctttccatttttcacttagatgatttt-cccaacttattgttcctcaaataaggtggttttatttttaaactctaatgtaataaagc 305  Q
    |||| ||||| ||||||  | |||| |||||| ||||||| ||||| ||||||||||||||  |||||||||| |||||||||||||||||| ||||| |    
T  11992832 tcgatcattttttctttttagtttttacttaggtgattttacccaatttattgttcctcaagcaaggtggtttaatttttaaactctaatgtgataaaac 11992931  T
Q  306 ggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttctataatt 405  Q
    ||||| ||||||||||||||  |||| ||||||||   ||||| | |||||||||| |||||||||||||| ||||| |||||||||||||| |||||||    
T  11992932 ggatacatcgaagattatttcctttttattgatcataaacaatctccatccaccaacattcttctcatttcaatattatcttttgatctcttttataatt 11993031  T
Q  406 gttgatgtttgattctatttg 426  Q
    |   |||||||||||||||||    
T  11993032 gccaatgtttgattctatttg 11993052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 3 - 425
Target Start/End: Complemental strand, 27433056 - 27432633
Alignment:
Q  3 tgggtaaattatactaaccccccttaaggtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctcccnnnnnnnnnnnnatc 102  Q
    |||| |||||| ||||||| ||| |||||| |||||||||||||||||| |||| ||||||||||  |||||||| ||||||| |            |||    
T  27433056 tgggcaaattacactaacctcccgtaaggttttcttaaataacacaaacacccgttctatttttta-actaaacactaatctctcttttttttttttatc 27432958  T
Q  103 aaattgacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnn-agcaattaacttcttcatacgagtatgaactcactt 201  Q
    |||||||||||||| || | ||||||||||||  ||||||||||| ||| |||||         ||||||||||||||||||||||||||||||||||||    
T  27432957 aaattgacaagcacctcccatataatataacacagtttaaactttattaattccattttttttgagcaattaacttcttcatacgagtatgaactcactt 27432858  T
Q  202 aattttcgaccatttcttctttccatttttcacttagatga-ttttcccaacttattgttcctcaaataaggtggttttatttttaaactctaatgtaat 300  Q
    | |||| |||| ||| ||||||| ||||||||||| | ||| ||||||||||||||||||||| |   |||||||||| ||||||||||||||| |||||    
T  27432857 agtttttgacctttttttctttctatttttcactttggtgaattttcccaacttattgttccttagtcaaggtggtttaatttttaaactctaaagtaat 27432758  T
Q  301 aaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttcta 400  Q
    ||| ||||||||||||| |||||||  ||||||||||| ||||||||||| |||| || ||||   ||||||||||||||||||||||| |||||||||     
T  27432757 aaaacggatatatcgaatattatttctttttcattgattaaccacaatgtccatcaacaaaaaaaattctcatttctatattctcttttaatctcttctg 27432658  T
Q  401 taattgttgatgtttgattctattt 425  Q
    ||||||  |||||||||||||||||    
T  27432657 taattgccgatgtttgattctattt 27432633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 243 - 434
Target Start/End: Original strand, 7855696 - 7855886
Alignment:
Q  243 ttttcccaacttattgttcctcaaataaggtggttttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaac 342  Q
    |||| |||||||||||||| |||   || ||||||| || ||||||||||||||||||||| |||||  || |||||||||||  ||||| |||||||||    
T  7855696 tttttccaacttattgttcatcattcaaagtggtttaatctttaaactctaatgtaataaaacggattaatagaagattatttctttttcgttgatcaac 7855795  T
Q  343 cacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttctataattgttgatgtttgattctatttggtggtaaa 434  Q
    || ||||| |||||| |||| |||||||||||||||||||||||||||||||||| | ||| ||| |||||||  |||||||||||||||||    
T  7855796 cataatgtccatccatcaaa-ttcttctcatttctatattctcttttgatctcttatgtaactgtcgatgtttagttctatttggtggtaaa 7855886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 9243439 - 9243359
Alignment:
Q  166 agcaattaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcacttagatgatttt 246  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||| || ||||||| ||||| ||||| | |||||||    
T  9243439 agcaattaactttttcatacgagtatgaactctcttaattttcaaccactttttctttcgattttacactttgttgatttt 9243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 13961234 - 13961173
Alignment:
Q  170 attaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccattttt 231  Q
    ||||||||||| ||||||||||||||||  ||||||||| ||||||| || || ||||||||    
T  13961234 attaacttctttatacgagtatgaactcctttaattttcaaccattttttattcccattttt 13961173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 7855524 - 7855583
Alignment:
Q  27 taaggtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctccc 87  Q
    |||||| |||||||||||||||||| | ||||| | |||||| |||||||| |||||||||    
T  7855524 taaggtattcttaaataacacaaacactcgctcca-ttttttaactaaacactaatctccc 7855583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 104 - 432
Target Start/End: Complemental strand, 10423171 - 10422841
Alignment:
Q  104 aattgacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnnagcaatt-aacttcttcatacgagtatgaactcactta 202  Q
    |||||||||||||||| | |||||||||||| | ||||||||| |||| ||| |        ||||||| ||||||| ||||||||||| ||||||||||    
T  10423171 aattgacaagcacttcccctataatataacacgttttaaacttcgttaattctattttttttagcaatttaacttctccatacgagtataaactcactta 10423072  T
Q  203 atttt-cgaccatttcttctttccatttttcacttagatgattttcccaacttattgttcctcaaataaggtggttttatttttaaactctaatgtaata 301  Q
    ||||| ||||||||| |||||||||||||||||||   |||||||| ||||||||||||||||||  |||||| ||| |||||||||||||||| |||||    
T  10423071 atttttcgaccattttttctttccatttttcactttagtgattttctcaacttattgttcctcaatcaaggtgatttaatttttaaactctaatataata 10422972  T
Q  302 aagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttctat 401  Q
    || |||||||||| || |||||||| |||||||||||||||  |||||| |||||||||||||||||||||||||||| ||||||  ||||||||| | |    
T  10422971 aaacggatatatcaaatattattttcttttcattgatcaactgcaatgtccatccaccaaaattcttctcatttctatgttctctcctgatctcttatgt 10422872  T
Q  402 aattgttgatgtttgattctatttggtggta 432  Q
    |||||  ||||||||||||||||||||||||    
T  10422871 aattgccgatgtttgattctatttggtggta 10422841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 20480481 - 20480687
Alignment:
Q  8 aaattatactaaccccccttaaggtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctcccnnnnnnnnnnnnatcaaatt 107  Q
    |||||| ||||||| ||||||||||||| |||| |||||||| | ||| |||||||||  | || |||||||||||||||            || ||| |    
T  20480481 aaattacactaacctcccttaaggtctttttaagtaacacaagcaccccctctattttactaacaaaacattaatctccc--ttatttagctatgaaaat 20480578  T
Q  108 gacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnnagcaattaacttcttcatacgagtatgaactcacttaatttt 207  Q
    ||||||| ||||  ||||||| ||||| ||||||| | |||||| |||||        ||||||||||||||| |||||||||||||||| ||||||||     
T  20480579 gacaagctcttccgttataatttaacacggtttaagccttgttaattccattttttttagcaattaacttctttatacgagtatgaactcccttaatttg 20480678  T
Q  208 cgaccattt 216  Q
    | |||||||    
T  20480679 caaccattt 20480687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 20481156 - 20481228
Alignment:
Q  272 gtggttttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaacca 344  Q
    ||||||| |||||||||||||||| |||||||   | |||||| |||||||||| |||||||||  |||||||    
T  20481156 gtggtttaatttttaaactctaatttaataaaagaggtatatcaaagattatttcattttcattagtcaacca 20481228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 10423235 - 10423195
Alignment:
Q  3 tgggtaaattatactaaccccccttaaggtcttcttaaata 43  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  10423235 tgggtaaattataataacctcccttaagatcttcttaaata 10423195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 167 - 397
Target Start/End: Original strand, 49003867 - 49004098
Alignment:
Q  167 gcaattaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcacttagatgatttt-cccaacttattgttcctca 265  Q
    |||||||||||||||||| |||||||||||||||||||||  || ||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||     
T  49003867 gcaattaacttcttcataagagtatgaactcacttaatttcggatcattttttctttccatttttcacttaggtaatttttcccaacttattgttcctcg 49003966  T
Q  266 aataaggtggttttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaatt 365  Q
       | ||| |||| ||||||||||| |||||||||||| | |||||||| |||||||| |  |||| |||||||||||||||||| | ||||||||||||    
T  49003967 gccatggtagtttaatttttaaactttaatgtaataaaacagatatatcaaagattatatcgtttttattgatcaaccacaatgtccttccaccaaaatt 49004066  T
Q  366 cttctcatttctatattctcttttgatctctt 397  Q
    |||||||||| | |||||||||||||||||||    
T  49004067 cttctcatttatttattctcttttgatctctt 49004098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 168 - 434
Target Start/End: Complemental strand, 8271214 - 8270950
Alignment:
Q  168 caattaacttcttcatacgagtatgaa-ctcacttaattt-----tcgaccatttcttctttccatttttcacttagatgat-tttcccaacttattgtt 260  Q
    |||||||||||||||||||||||| || | ||||||||||     |||||||||| || |||||||||||||||||| | || |||||||||||||||||    
T  8271214 caattaacttcttcatacgagtattaaacccacttaatttaattttcgaccatttttt-tttccatttttcacttaggtaatctttcccaacttattgtt 8271116  T
Q  261 cctcaaataaggtggttttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccacca 360  Q
     || |   ||||||||||  ||||||||| ||||||||||||| |||||||||| ||| ||||||  ||||||||||||||||||||||| |||||||||    
T  8271115 tct-agtcaaggtggtttagtttttaaacactaatgtaataaaacggatatatcaaag-ttatttccttttcattgatcaaccacaatgtccatccacca 8271018  T
Q  361 aaattcttctcatttctatattctcttttgatctcttctataattgttgatgtttgattctatttggtggtaaa 434  Q
    ||||||||||||| |||||||||||||||||||| |||      ||| ||||||||||| ||||||||||||||    
T  8271017 aaattcttctcatctctatattctcttttgatctgttc------tgtcgatgtttgattttatttggtggtaaa 8270950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 280 - 428
Target Start/End: Original strand, 11671350 - 11671498
Alignment:
Q  280 atttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctat 379  Q
    |||||||||||||||||||||||| |  ||||||| ||||||||||  ||||||||||||||||||||||  |||||||||||| ||||||| |||||||    
T  11671350 atttttaaactctaatgtaataaaacatatatatcaaagattatttctttttcattgatcaaccacaatgcccatccaccaaaaatcttctcttttctat 11671449  T
Q  380 attctcttttgatctcttctataattgttgatgtttgattctatttggt 428  Q
    |||||||||||||||||| ||||||||  || |||| ||||||||||||    
T  11671450 attctcttttgatctcttatataattgccgacgttttattctatttggt 11671498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 11669737 - 11669805
Alignment:
Q  166 agcaattaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcac 234  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  11669737 agcaattaacttcttcatacgagtatgaactcacttcatattcgaccattttttctttccatttttcac 11669805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 434
Target Start/End: Original strand, 7629471 - 7629582
Alignment:
Q  323 ttttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttctataattgttgatgtttgattcta 422  Q
    |||| ||||||| | ||||||||||||| |||||| |||||  |||| |||||||||||||||||||  | || ||| | ||||| | ||||||||||||    
T  7629471 tttttttttcatcggtcaaccacaatgtccatccatcaaaacccttcccatttctatattctcttttactatcctctgttattgtcggtgtttgattcta 7629570  T
Q  423 tttggtggtaaa 434  Q
    ||||||||||||    
T  7629571 tttggtggtaaa 7629582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 8271392 - 8271309
Alignment:
Q  3 tgggtaaattatactaaccccccttaaggtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctccc 87  Q
    |||| |||||| ||||||| ||||||||| |||||||||||||| |||| ||||||||||| |||| |||||||| |||||||||    
T  8271392 tgggcaaattacactaacctcccttaagggcttcttaaataacataaacacccgctctatt-ttttaactaaacactaatctccc 8271309  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 375 - 434
Target Start/End: Original strand, 8650635 - 8650694
Alignment:
Q  375 tctatattctcttttgatctcttctataattgttgatgtttgattctatttggtggtaaa 434  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||||| |||||||    
T  8650635 tctatattctcttttagtctcttctttaattgttgatgtttgattctatttgttggtaaa 8650694  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 15089851 - 15089760
Alignment:
Q  100 atcaaattgacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnnagcaattaacttcttcatacgagtat 191  Q
    ||||||||||||||||||||  ||||| ||||||| |||| |||||||||||||||||        ||||||||||||||||||| ||||||    
T  15089851 atcaaattgacaagcacttcatttatattataacacggttcaaactttgttagttccattttattgagcaattaacttcttcatatgagtat 15089760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 8650547 - 8650622
Alignment:
Q  272 gtggttttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaa 347  Q
    ||||||| |||||||||||||||| ||||||| | |||||||||| ||||||||  |||| |||  ||||||||||    
T  8650547 gtggtttaatttttaaactctaatttaataaaacagatatatcgatgattatttcctttttattagtcaaccacaa 8650622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 11669615 - 11669674
Alignment:
Q  8 aaattatactaaccccccttaaggtcttcttaaataacacaaacgcccgctctatttttt 67  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||  || |||||||||||    
T  11669615 aaattacactaacctcccataaggtcttcttaaataacacaaacatccactctatttttt 11669674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 8271292 - 8271255
Alignment:
Q  100 atcaaattgacaagcacttctcttataatataacatgg 137  Q
    |||||||||||||||||||||||||||| |||||||||    
T  8271292 atcaaattgacaagcacttctcttataaaataacatgg 8271255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 102 - 434
Target Start/End: Complemental strand, 18193292 - 18192962
Alignment:
Q  102 caaattgacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnnagcaattaacttcttcatacgagtatgaactcactt 201  Q
    |||||||||||||||||| ||||||||||||   ||||||||  |||| | |||||        |||||||||||||||||||||||| ||  || ||||    
T  18193292 caaattgacaagcacttcccttataatataa---ggtttaaa--ttgtcaattccattttttttagcaattaacttcttcatacgagtttggtctaactt 18193198  T
Q  202 aattttcgaccatttcttctttccatttttcacttagatgattttc---ccaacttattgttcctcaaataaggtggttttatttttaaactctaatgta 298  Q
    |||||| ||| |||| ||  ||| |||||||| |||| |||||||    |||| |||||||| ||||   ||||| |||| ||||| |||||||||||||    
T  18193197 aatttttgactatttttttcttctatttttcatttaggtgattttttttccaaattattgtttctcagtcaaggttgtttaattttcaaactctaatgta 18193098  T
Q  299 ataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttc 398  Q
    ||||| ||  ||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  18193097 ataaaacgagtatatcgaaaattatttccttttcattgatcaaccacaatgtccatccaccaaaattcttctcatttccatattctcttttgatctcttc 18192998  T
Q  399 tataattgttgatgtttgattctatttggtggtaaa 434  Q
    | ||||||  |||||||  || |||||| |||||||    
T  18192997 tgtaattgccgatgttttgttgtatttgatggtaaa 18192962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 194 - 434
Target Start/End: Original strand, 19277622 - 19277851
Alignment:
Q  194 actcacttaattttcgaccatttcttctttccatttttcacttagatgattttcc-caacttattgttcctcaaataaggtggttttatttttaaactct 292  Q
    ||||| ||||||||| || |||| |||||| |||||||||||| | ||||||| | |||||||||||||||||   | |||||||| |||||||||||||    
T  19277622 actcatttaattttcaacaattttttcttttcatttttcacttgg-tgatttttctcaacttattgttcctcagtcacggtggtttaatttttaaactct 19277720  T
Q  293 aatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgat 392  Q
    ||| |||||||   |||||||||||||||||||  ||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||| ||      
T  19277721 aatataataaaatagatatatcgaagattatttccttttcattgatcaaccacaatgtccatccatcaaaatt-ttctcatttttatattctcttctg-- 19277817  T
Q  393 ctcttctataattgttgatgtttgattctatttggtggtaaa 434  Q
            ||||||| ||||||||||||| ||||||||||||    
T  19277818 --------taattgtcgatgtttgattctttttggtggtaaa 19277851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 434
Target Start/End: Original strand, 21086514 - 21086671
Alignment:
Q  277 tttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttc 376  Q
    |||| |||||||||||||||||||||| |  |||||||||| |||||||  ||||||||| ||||| |||  || ||||||| |||| ||||| |||||     
T  21086514 tttaattttaaactctaatgtaataaaacatatatatcgaaaattatttccttttcattggtcaacaacaccgtccatccacgaaaactcttcccatttt 21086613  T
Q  377 tatattctcttttgatctcttctataattgttgatgtttgattctatttggtggtaaa 434  Q
    |||||||||||||| |||||| | ||||||| ||||||||||||||||| ||| ||||    
T  21086614 tatattctcttttgctctcttttgtaattgtggatgtttgattctatttagtgctaaa 21086671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 27082066 - 27082146
Alignment:
Q  166 agcaattaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcacttagatgatttt 246  Q
    |||||||||||||||||||||||||||||||| |||||||||| | ||||| |||| ||||||| |||||||| |||||||    
T  27082066 agcaattaacttcttcatacgagtatgaactcgcttaattttcaatcattttttctatccatttgtcacttaggtgatttt 27082146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 27263945 - 27263890
Alignment:
Q  31 gtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctcc 86  Q
    |||||||||||||||| |||| ||| |||||||||||| | |||||||||||||||    
T  27263945 gtcttcttaaataacataaacacccactctattttttttagtaaacattaatctcc 27263890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 27080924 - 27080975
Alignment:
Q  100 atcaaattgacaagcacttctcttataatataacatggtttaaactttgtta 151  Q
    |||||||| ||||||||||  |||||||||||| | ||||||||||||||||    
T  27080924 atcaaattaacaagcactttccttataatataatagggtttaaactttgtta 27080975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 3563 - 3643
Alignment:
Q  166 agcaattaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcacttagatgatttt 246  Q
    |||||||||||| |||||||||||||||| || |||||||||  |||| || ||||||||||||| ||||| | |||||||    
T  3563 agcaattaactttttcatacgagtatgaaatctcttaatttttaaccactttttctttccattttccactttgttgatttt 3643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 2015958 - 2015917
Alignment:
Q  8 aaattatactaaccccccttaaggtcttcttaaataacacaa 49  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  2015958 aaattacactaacctcccttaaggtcttcttaaataacacaa 2015917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 434
Target Start/End: Complemental strand, 2015253 - 2015194
Alignment:
Q  375 tctatattctcttttgatctcttctataattgttgatgtttgattctatttggtggtaaa 434  Q
    |||||||| ||||||  |||||||| || |||| |||||||||||||||||| |||||||    
T  2015253 tctatattatcttttagtctcttctttatttgtcgatgtttgattctatttgttggtaaa 2015194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 2015336 - 2015278
Alignment:
Q  277 tttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcatt 335  Q
    |||| |||||||||||||| |||||||   |||||||||||||||||||  ||||||||    
T  2015336 tttaattttaaactctaatttaataaaatagatatatcgaagattatttccttttcatt 2015278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 53553 - 53496
Alignment:
Q  179 ttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcactt 236  Q
    ||||||| ||||||||||   ||||||||||||||||| |||||  ||||||||||||    
T  53553 ttcatacaagtatgaacttctttaattttcgaccattttttcttatcatttttcactt 53496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 20471519 - 20471471
Alignment:
Q  168 caattaacttcttcatacgagtatgaactcacttaattttcgaccattt 216  Q
    ||||||||||||| |||||| ||||||||| ||||||| || |||||||    
T  20471519 caattaacttctttatacgactatgaactcccttaattctcaaccattt 20471471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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