View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_low_21 (Length: 462)

Name: NF1107_low_21
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_low_21
NF1107_low_21
[»] chr5 (2 HSPs)
chr5 (103-431)||(7958491-7958820)
chr5 (8-425)||(11992635-11993052)
[»] chr2 (4 HSPs)
chr2 (103-431)||(10422841-10423171)
chr2 (8-215)||(20480481-20480687)
chr2 (271-343)||(20481156-20481228)
chr2 (3-43)||(10423195-10423235)
[»] chr4 (5 HSPs)
chr4 (3-424)||(27432633-27433056)
chr4 (242-433)||(7855696-7855886)
chr4 (165-245)||(9243359-9243439)
chr4 (169-230)||(13961173-13961234)
chr4 (27-87)||(7855524-7855583)
[»] chr7 (11 HSPs)
chr7 (166-396)||(49003867-49004098)
chr7 (167-433)||(8270950-8271214)
chr7 (279-427)||(11671350-11671498)
chr7 (165-233)||(11669737-11669805)
chr7 (322-433)||(7629471-7629582)
chr7 (3-87)||(8271309-8271392)
chr7 (374-433)||(8650635-8650694)
chr7 (99-190)||(15089760-15089851)
chr7 (271-346)||(8650547-8650622)
chr7 (8-67)||(11669615-11669674)
chr7 (99-136)||(8271255-8271292)
[»] chr3 (6 HSPs)
chr3 (101-433)||(18192962-18193292)
chr3 (193-433)||(19277622-19277851)
chr3 (276-433)||(21086514-21086671)
chr3 (165-245)||(27082066-27082146)
chr3 (31-86)||(27263890-27263945)
chr3 (99-150)||(27080924-27080975)
[»] scaffold0753 (1 HSPs)
scaffold0753 (165-245)||(3563-3643)
[»] chr1 (3 HSPs)
chr1 (8-49)||(2015917-2015958)
chr1 (374-433)||(2015194-2015253)
chr1 (276-334)||(2015278-2015336)
[»] scaffold0008 (1 HSPs)
scaffold0008 (178-235)||(53496-53553)
[»] chr6 (1 HSPs)
chr6 (167-215)||(20471471-20471519)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 103 - 431
Target Start/End: Original strand, 7958491 - 7958820
Alignment:
Q  103 aattgacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnnagcaattaacttcttcatacgagtatgaactcacttaa 202  Q
    |||||| ||||||||| | |||||||||||| ||||||||||| |||  ||| |        |||||||||||||| ||||||||||| |||||||||||    
T  7958491 aattgaaaagcacttcccctataatataacacggtttaaacttcgttcattctattttttttagcaattaacttctccatacgagtataaactcacttaa 7958590  T
Q  203 tttt-cgaccatttcttctttccatttttcacttagatgattttcccaacttattgttcctcaaataaggtggttttatttttaaactctaatgtaataa 301  Q
    |||| ||||||||| |||||||||||||||||||   |||||||| |||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||    
T  7958591 tttttcgaccattttttctttccatttttcactttagtgattttctcaacttattgttcctcaattaaggtgatttaatttttaaactctaatataataa 7958690  T
Q  302 agcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttctata 401  Q
    | |||||||||| ||||||||||| |||||||||||||||  |||||| ||||||| |||||||||||||||||||||||||||  ||||||||| | ||    
T  7958691 aacggatatatcaaagattattttcttttcattgatcaactgcaatgtccatccactaaaattcttctcatttctatattctctcctgatctcttatgta 7958790  T
Q  402 attgttgatgtttgattctatttggtggta 431  Q
    ||||  ||||||||||||||||||| ||||    
T  7958791 attgccgatgtttgattctatttggcggta 7958820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 425
Target Start/End: Original strand, 11992635 - 11993052
Alignment:
Q  8 aaattatactaaccccccttaaggtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctcccnnnnnnnnnnnatcaaattg 107  Q
    |||||| ||||||| ||||||||||||||||||| ||||||| | | |  ||||||||||| ||||||||||||| ||||            ||||||||    
T  11992635 aaattacactaacctcccttaaggtcttcttaaaaaacacaatcactctttctatttttttaactaaacattaatatcccttattttctg--tcaaattg 11992732  T
Q  108 acaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnn-agcaattaacttcttcatacgagtatgaactcacttaatttt 206  Q
    ||||||||||  |||||||| ||| | |||||||||||||||| |||||         ||||||||||||||||||||||||||||||||||||||||||    
T  11992733 acaagcacttgccttataatttaatacggtttaaactttgttaattccatttttcttgagcaattaacttcttcatacgagtatgaactcacttaatttt 11992832  T
Q  207 cgaccatttcttctttccatttttcacttagatgatttt-cccaacttattgttcctcaaataaggtggttttatttttaaactctaatgtaataaagcg 305  Q
    ||| ||||| ||||||  | |||| |||||| ||||||| ||||| ||||||||||||||  |||||||||| |||||||||||||||||| ||||| ||    
T  11992833 cgatcattttttctttttagtttttacttaggtgattttacccaatttattgttcctcaagcaaggtggtttaatttttaaactctaatgtgataaaacg 11992932  T
Q  306 gatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttctataattg 405  Q
    |||| ||||||||||||||  |||| ||||||||   ||||| | |||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||    
T  11992933 gatacatcgaagattatttcctttttattgatcataaacaatctccatccaccaacattcttctcatttcaatattatcttttgatctcttttataattg 11993032  T
Q  406 ttgatgtttgattctatttg 425  Q
       |||||||||||||||||    
T  11993033 ccaatgtttgattctatttg 11993052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 103 - 431
Target Start/End: Complemental strand, 10423171 - 10422841
Alignment:
Q  103 aattgacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnnagcaatt-aacttcttcatacgagtatgaactcactta 201  Q
    |||||||||||||||| | |||||||||||| | ||||||||| |||| ||| |        ||||||| ||||||| ||||||||||| ||||||||||    
T  10423171 aattgacaagcacttcccctataatataacacgttttaaacttcgttaattctattttttttagcaatttaacttctccatacgagtataaactcactta 10423072  T
Q  202 atttt-cgaccatttcttctttccatttttcacttagatgattttcccaacttattgttcctcaaataaggtggttttatttttaaactctaatgtaata 300  Q
    ||||| ||||||||| |||||||||||||||||||   |||||||| ||||||||||||||||||  |||||| ||| |||||||||||||||| |||||    
T  10423071 atttttcgaccattttttctttccatttttcactttagtgattttctcaacttattgttcctcaatcaaggtgatttaatttttaaactctaatataata 10422972  T
Q  301 aagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttctat 400  Q
    || |||||||||| || |||||||| |||||||||||||||  |||||| |||||||||||||||||||||||||||| ||||||  ||||||||| | |    
T  10422971 aaacggatatatcaaatattattttcttttcattgatcaactgcaatgtccatccaccaaaattcttctcatttctatgttctctcctgatctcttatgt 10422872  T
Q  401 aattgttgatgtttgattctatttggtggta 431  Q
    |||||  ||||||||||||||||||||||||    
T  10422871 aattgccgatgtttgattctatttggtggta 10422841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 20480481 - 20480687
Alignment:
Q  8 aaattatactaaccccccttaaggtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctcccnnnnnnnnnnnatcaaattg 107  Q
    |||||| ||||||| ||||||||||||| |||| |||||||| | ||| |||||||||  | || |||||||||||||||           || ||| ||    
T  20480481 aaattacactaacctcccttaaggtctttttaagtaacacaagcaccccctctattttactaacaaaacattaatctccc-ttatttagctatgaaaatg 20480579  T
Q  108 acaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnnagcaattaacttcttcatacgagtatgaactcacttaattttc 207  Q
    |||||| ||||  ||||||| ||||| ||||||| | |||||| |||||        ||||||||||||||| |||||||||||||||| |||||||| |    
T  20480580 acaagctcttccgttataatttaacacggtttaagccttgttaattccattttttttagcaattaacttctttatacgagtatgaactcccttaatttgc 20480679  T
Q  208 gaccattt 215  Q
     |||||||    
T  20480680 aaccattt 20480687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 20481156 - 20481228
Alignment:
Q  271 gtggttttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaacca 343  Q
    ||||||| |||||||||||||||| |||||||   | |||||| |||||||||| |||||||||  |||||||    
T  20481156 gtggtttaatttttaaactctaatttaataaaagaggtatatcaaagattatttcattttcattagtcaacca 20481228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 10423235 - 10423195
Alignment:
Q  3 tgggtaaattatactaaccccccttaaggtcttcttaaata 43  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  10423235 tgggtaaattataataacctcccttaagatcttcttaaata 10423195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 3 - 424
Target Start/End: Complemental strand, 27433056 - 27432633
Alignment:
Q  3 tgggtaaattatactaaccccccttaaggtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctcccnnnnnnnnnnn-atc 101  Q
    |||| |||||| ||||||| ||| |||||| |||||||||||||||||| |||| ||||||||||  |||||||| ||||||| |            |||    
T  27433056 tgggcaaattacactaacctcccgtaaggttttcttaaataacacaaacacccgttctatttttta-actaaacactaatctctcttttttttttttatc 27432958  T
Q  102 aaattgacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnn-agcaattaacttcttcatacgagtatgaactcactt 200  Q
    |||||||||||||| || | ||||||||||||  ||||||||||| ||| |||||         ||||||||||||||||||||||||||||||||||||    
T  27432957 aaattgacaagcacctcccatataatataacacagtttaaactttattaattccattttttttgagcaattaacttcttcatacgagtatgaactcactt 27432858  T
Q  201 aattttcgaccatttcttctttccatttttcacttagatga-ttttcccaacttattgttcctcaaataaggtggttttatttttaaactctaatgtaat 299  Q
    | |||| |||| ||| ||||||| ||||||||||| | ||| ||||||||||||||||||||| |   |||||||||| ||||||||||||||| |||||    
T  27432857 agtttttgacctttttttctttctatttttcactttggtgaattttcccaacttattgttccttagtcaaggtggtttaatttttaaactctaaagtaat 27432758  T
Q  300 aaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttcta 399  Q
    ||| ||||||||||||| |||||||  ||||||||||| ||||||||||| |||| || ||||   ||||||||||||||||||||||| |||||||||     
T  27432757 aaaacggatatatcgaatattatttctttttcattgattaaccacaatgtccatcaacaaaaaaaattctcatttctatattctcttttaatctcttctg 27432658  T
Q  400 taattgttgatgtttgattctattt 424  Q
    ||||||  |||||||||||||||||    
T  27432657 taattgccgatgtttgattctattt 27432633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 242 - 433
Target Start/End: Original strand, 7855696 - 7855886
Alignment:
Q  242 ttttcccaacttattgttcctcaaataaggtggttttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaac 341  Q
    |||| |||||||||||||| |||   || ||||||| || ||||||||||||||||||||| |||||  || |||||||||||  ||||| |||||||||    
T  7855696 tttttccaacttattgttcatcattcaaagtggtttaatctttaaactctaatgtaataaaacggattaatagaagattatttctttttcgttgatcaac 7855795  T
Q  342 cacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttctataattgttgatgtttgattctatttggtggtaaa 433  Q
    || ||||| |||||| |||| |||||||||||||||||||||||||||||||||| | ||| ||| |||||||  |||||||||||||||||    
T  7855796 cataatgtccatccatcaaa-ttcttctcatttctatattctcttttgatctcttatgtaactgtcgatgtttagttctatttggtggtaaa 7855886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 9243439 - 9243359
Alignment:
Q  165 agcaattaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcacttagatgatttt 245  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||| || ||||||| ||||| ||||| | |||||||    
T  9243439 agcaattaactttttcatacgagtatgaactctcttaattttcaaccactttttctttcgattttacactttgttgatttt 9243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 13961234 - 13961173
Alignment:
Q  169 attaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccattttt 230  Q
    ||||||||||| ||||||||||||||||  ||||||||| ||||||| || || ||||||||    
T  13961234 attaacttctttatacgagtatgaactcctttaattttcaaccattttttattcccattttt 13961173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 7855524 - 7855583
Alignment:
Q  27 taaggtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctccc 87  Q
    |||||| |||||||||||||||||| | ||||| | |||||| |||||||| |||||||||    
T  7855524 taaggtattcttaaataacacaaacactcgctcca-ttttttaactaaacactaatctccc 7855583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 166 - 396
Target Start/End: Original strand, 49003867 - 49004098
Alignment:
Q  166 gcaattaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcacttagatgatttt-cccaacttattgttcctca 264  Q
    |||||||||||||||||| |||||||||||||||||||||  || ||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||     
T  49003867 gcaattaacttcttcataagagtatgaactcacttaatttcggatcattttttctttccatttttcacttaggtaatttttcccaacttattgttcctcg 49003966  T
Q  265 aataaggtggttttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaatt 364  Q
       | ||| |||| ||||||||||| |||||||||||| | |||||||| |||||||| |  |||| |||||||||||||||||| | ||||||||||||    
T  49003967 gccatggtagtttaatttttaaactttaatgtaataaaacagatatatcaaagattatatcgtttttattgatcaaccacaatgtccttccaccaaaatt 49004066  T
Q  365 cttctcatttctatattctcttttgatctctt 396  Q
    |||||||||| | |||||||||||||||||||    
T  49004067 cttctcatttatttattctcttttgatctctt 49004098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 167 - 433
Target Start/End: Complemental strand, 8271214 - 8270950
Alignment:
Q  167 caattaacttcttcatacgagtatgaa-ctcacttaattt-----tcgaccatttcttctttccatttttcacttagatgat-tttcccaacttattgtt 259  Q
    |||||||||||||||||||||||| || | ||||||||||     |||||||||| || |||||||||||||||||| | || |||||||||||||||||    
T  8271214 caattaacttcttcatacgagtattaaacccacttaatttaattttcgaccatttttt-tttccatttttcacttaggtaatctttcccaacttattgtt 8271116  T
Q  260 cctcaaataaggtggttttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccacca 359  Q
     || |   ||||||||||  ||||||||| ||||||||||||| |||||||||| ||| ||||||  ||||||||||||||||||||||| |||||||||    
T  8271115 tct-agtcaaggtggtttagtttttaaacactaatgtaataaaacggatatatcaaag-ttatttccttttcattgatcaaccacaatgtccatccacca 8271018  T
Q  360 aaattcttctcatttctatattctcttttgatctcttctataattgttgatgtttgattctatttggtggtaaa 433  Q
    ||||||||||||| |||||||||||||||||||| |||      ||| ||||||||||| ||||||||||||||    
T  8271017 aaattcttctcatctctatattctcttttgatctgttc------tgtcgatgtttgattttatttggtggtaaa 8270950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 11671350 - 11671498
Alignment:
Q  279 atttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctat 378  Q
    |||||||||||||||||||||||| |  ||||||| ||||||||||  ||||||||||||||||||||||  |||||||||||| ||||||| |||||||    
T  11671350 atttttaaactctaatgtaataaaacatatatatcaaagattatttctttttcattgatcaaccacaatgcccatccaccaaaaatcttctcttttctat 11671449  T
Q  379 attctcttttgatctcttctataattgttgatgtttgattctatttggt 427  Q
    |||||||||||||||||| ||||||||  || |||| ||||||||||||    
T  11671450 attctcttttgatctcttatataattgccgacgttttattctatttggt 11671498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 11669737 - 11669805
Alignment:
Q  165 agcaattaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcac 233  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  11669737 agcaattaacttcttcatacgagtatgaactcacttcatattcgaccattttttctttccatttttcac 11669805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 433
Target Start/End: Original strand, 7629471 - 7629582
Alignment:
Q  322 ttttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttctataattgttgatgtttgattcta 421  Q
    |||| ||||||| | ||||||||||||| |||||| |||||  |||| |||||||||||||||||||  | || ||| | ||||| | ||||||||||||    
T  7629471 tttttttttcatcggtcaaccacaatgtccatccatcaaaacccttcccatttctatattctcttttactatcctctgttattgtcggtgtttgattcta 7629570  T
Q  422 tttggtggtaaa 433  Q
    ||||||||||||    
T  7629571 tttggtggtaaa 7629582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 8271392 - 8271309
Alignment:
Q  3 tgggtaaattatactaaccccccttaaggtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctccc 87  Q
    |||| |||||| ||||||| ||||||||| |||||||||||||| |||| ||||||||||| |||| |||||||| |||||||||    
T  8271392 tgggcaaattacactaacctcccttaagggcttcttaaataacataaacacccgctctatt-ttttaactaaacactaatctccc 8271309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 374 - 433
Target Start/End: Original strand, 8650635 - 8650694
Alignment:
Q  374 tctatattctcttttgatctcttctataattgttgatgtttgattctatttggtggtaaa 433  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||||| |||||||    
T  8650635 tctatattctcttttagtctcttctttaattgttgatgtttgattctatttgttggtaaa 8650694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 15089851 - 15089760
Alignment:
Q  99 atcaaattgacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnnagcaattaacttcttcatacgagtat 190  Q
    ||||||||||||||||||||  ||||| ||||||| |||| |||||||||||||||||        ||||||||||||||||||| ||||||    
T  15089851 atcaaattgacaagcacttcatttatattataacacggttcaaactttgttagttccattttattgagcaattaacttcttcatatgagtat 15089760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 8650547 - 8650622
Alignment:
Q  271 gtggttttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaa 346  Q
    ||||||| |||||||||||||||| ||||||| | |||||||||| ||||||||  |||| |||  ||||||||||    
T  8650547 gtggtttaatttttaaactctaatttaataaaacagatatatcgatgattatttcctttttattagtcaaccacaa 8650622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 11669615 - 11669674
Alignment:
Q  8 aaattatactaaccccccttaaggtcttcttaaataacacaaacgcccgctctatttttt 67  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||  || |||||||||||    
T  11669615 aaattacactaacctcccataaggtcttcttaaataacacaaacatccactctatttttt 11669674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 8271292 - 8271255
Alignment:
Q  99 atcaaattgacaagcacttctcttataatataacatgg 136  Q
    |||||||||||||||||||||||||||| |||||||||    
T  8271292 atcaaattgacaagcacttctcttataaaataacatgg 8271255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 101 - 433
Target Start/End: Complemental strand, 18193292 - 18192962
Alignment:
Q  101 caaattgacaagcacttctcttataatataacatggtttaaactttgttagttccannnnnnnnagcaattaacttcttcatacgagtatgaactcactt 200  Q
    |||||||||||||||||| ||||||||||||   ||||||||  |||| | |||||        |||||||||||||||||||||||| ||  || ||||    
T  18193292 caaattgacaagcacttcccttataatataa---ggtttaaa--ttgtcaattccattttttttagcaattaacttcttcatacgagtttggtctaactt 18193198  T
Q  201 aattttcgaccatttcttctttccatttttcacttagatgattttc---ccaacttattgttcctcaaataaggtggttttatttttaaactctaatgta 297  Q
    |||||| ||| |||| ||  ||| |||||||| |||| |||||||    |||| |||||||| ||||   ||||| |||| ||||| |||||||||||||    
T  18193197 aatttttgactatttttttcttctatttttcatttaggtgattttttttccaaattattgtttctcagtcaaggttgtttaattttcaaactctaatgta 18193098  T
Q  298 ataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgatctcttc 397  Q
    ||||| ||  ||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  18193097 ataaaacgagtatatcgaaaattatttccttttcattgatcaaccacaatgtccatccaccaaaattcttctcatttccatattctcttttgatctcttc 18192998  T
Q  398 tataattgttgatgtttgattctatttggtggtaaa 433  Q
    | ||||||  |||||||  || |||||| |||||||    
T  18192997 tgtaattgccgatgttttgttgtatttgatggtaaa 18192962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 193 - 433
Target Start/End: Original strand, 19277622 - 19277851
Alignment:
Q  193 actcacttaattttcgaccatttcttctttccatttttcacttagatgattttcc-caacttattgttcctcaaataaggtggttttatttttaaactct 291  Q
    ||||| ||||||||| || |||| |||||| |||||||||||| | ||||||| | |||||||||||||||||   | |||||||| |||||||||||||    
T  19277622 actcatttaattttcaacaattttttcttttcatttttcacttgg-tgatttttctcaacttattgttcctcagtcacggtggtttaatttttaaactct 19277720  T
Q  292 aatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttctatattctcttttgat 391  Q
    ||| |||||||   |||||||||||||||||||  ||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||| ||      
T  19277721 aatataataaaatagatatatcgaagattatttccttttcattgatcaaccacaatgtccatccatcaaaatt-ttctcatttttatattctcttctg-- 19277817  T
Q  392 ctcttctataattgttgatgtttgattctatttggtggtaaa 433  Q
            ||||||| ||||||||||||| ||||||||||||    
T  19277818 --------taattgtcgatgtttgattctttttggtggtaaa 19277851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 276 - 433
Target Start/End: Original strand, 21086514 - 21086671
Alignment:
Q  276 tttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcattgatcaaccacaatgttcatccaccaaaattcttctcatttc 375  Q
    |||| |||||||||||||||||||||| |  |||||||||| |||||||  ||||||||| ||||| |||  || ||||||| |||| ||||| |||||     
T  21086514 tttaattttaaactctaatgtaataaaacatatatatcgaaaattatttccttttcattggtcaacaacaccgtccatccacgaaaactcttcccatttt 21086613  T
Q  376 tatattctcttttgatctcttctataattgttgatgtttgattctatttggtggtaaa 433  Q
    |||||||||||||| |||||| | ||||||| ||||||||||||||||| ||| ||||    
T  21086614 tatattctcttttgctctcttttgtaattgtggatgtttgattctatttagtgctaaa 21086671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 27082066 - 27082146
Alignment:
Q  165 agcaattaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcacttagatgatttt 245  Q
    |||||||||||||||||||||||||||||||| |||||||||| | ||||| |||| ||||||| |||||||| |||||||    
T  27082066 agcaattaacttcttcatacgagtatgaactcgcttaattttcaatcattttttctatccatttgtcacttaggtgatttt 27082146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 27263945 - 27263890
Alignment:
Q  31 gtcttcttaaataacacaaacgcccgctctatttttttcactaaacattaatctcc 86  Q
    |||||||||||||||| |||| ||| |||||||||||| | |||||||||||||||    
T  27263945 gtcttcttaaataacataaacacccactctattttttttagtaaacattaatctcc 27263890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 27080924 - 27080975
Alignment:
Q  99 atcaaattgacaagcacttctcttataatataacatggtttaaactttgtta 150  Q
    |||||||| ||||||||||  |||||||||||| | ||||||||||||||||    
T  27080924 atcaaattaacaagcactttccttataatataatagggtttaaactttgtta 27080975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 3563 - 3643
Alignment:
Q  165 agcaattaacttcttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcacttagatgatttt 245  Q
    |||||||||||| |||||||||||||||| || |||||||||  |||| || ||||||||||||| ||||| | |||||||    
T  3563 agcaattaactttttcatacgagtatgaaatctcttaatttttaaccactttttctttccattttccactttgttgatttt 3643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 2015958 - 2015917
Alignment:
Q  8 aaattatactaaccccccttaaggtcttcttaaataacacaa 49  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  2015958 aaattacactaacctcccttaaggtcttcttaaataacacaa 2015917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 433
Target Start/End: Complemental strand, 2015253 - 2015194
Alignment:
Q  374 tctatattctcttttgatctcttctataattgttgatgtttgattctatttggtggtaaa 433  Q
    |||||||| ||||||  |||||||| || |||| |||||||||||||||||| |||||||    
T  2015253 tctatattatcttttagtctcttctttatttgtcgatgtttgattctatttgttggtaaa 2015194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 2015336 - 2015278
Alignment:
Q  276 tttatttttaaactctaatgtaataaagcggatatatcgaagattattttattttcatt 334  Q
    |||| |||||||||||||| |||||||   |||||||||||||||||||  ||||||||    
T  2015336 tttaattttaaactctaatttaataaaatagatatatcgaagattatttccttttcatt 2015278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 53553 - 53496
Alignment:
Q  178 ttcatacgagtatgaactcacttaattttcgaccatttcttctttccatttttcactt 235  Q
    ||||||| ||||||||||   ||||||||||||||||| |||||  ||||||||||||    
T  53553 ttcatacaagtatgaacttctttaattttcgaccattttttcttatcatttttcactt 53496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 20471519 - 20471471
Alignment:
Q  167 caattaacttcttcatacgagtatgaactcacttaattttcgaccattt 215  Q
    ||||||||||||| |||||| ||||||||| ||||||| || |||||||    
T  20471519 caattaacttctttatacgactatgaactcccttaattctcaaccattt 20471471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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