View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1107_low_22 (Length: 459)
Name: NF1107_low_22
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 86 - 430
Target Start/End: Complemental strand, 46359642 - 46359298
Alignment:
| Q |
86 |
cataggcagtaataattatactgatatcgtatattgaaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacttcct |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46359642 |
cataggcagtaataattatactgatatcgtatattgaaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacctcct |
46359543 |
T |
|
| Q |
186 |
cagggatatcattcaacatcttgaaagccaaatgtacagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaacttcag |
285 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46359542 |
cggggatatcattcaacatcttgaaagccaaatgtacagtttctttttttaaacatagcattttgatcatattaagtggtaacaacattcttaacttcag |
46359443 |
T |
|
| Q |
286 |
cggccaatttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtca |
385 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |
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| T |
46359442 |
cggccaatttgggtttgtttagcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtcc |
46359343 |
T |
|
| Q |
386 |
ccaagtatctcgccgtcatcaggaaggatggtttctggatgaagc |
430 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46359342 |
ccaagtatctcgccgtcatcaggaaggatggtttctggatgaagc |
46359298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 122 - 430
Target Start/End: Complemental strand, 44460736 - 44460428
Alignment:
| Q |
122 |
aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacttcctcagggatatcattcaacatcttgaaagccaaatgta |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
44460736 |
aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacctcctcggggatatcattcaacatcttgaaagccaaatgta |
44460637 |
T |
|
| Q |
222 |
cagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaacttcagcggccaatttgggtttgttttgcgtctctcatttgc |
321 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44460636 |
cagtttctttttttaaacatagcatttggatcatattaagtggtaacaacattcttaacttcagcggccagtttgggtttgttttgcgtctctcatttgc |
44460537 |
T |
|
| Q |
322 |
agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagtatctcgccgtcatcaggaaggatggtttct |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||| |
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| T |
44460536 |
agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtccccaagtatctcgccgtcatcaggaaggatggtttct |
44460437 |
T |
|
| Q |
422 |
ggatgaagc |
430 |
Q |
| |
|
||||||||| |
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|
| T |
44460436 |
ggatgaagc |
44460428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 122 - 430
Target Start/End: Complemental strand, 44468269 - 44467961
Alignment:
| Q |
122 |
aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacttcctcagggatatcattcaacatcttgaaagccaaatgta |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
44468269 |
aaggctccgaaaacatgtgtaaagagcatgagtttaaacaatttttcccggtcgtccacctcctcggggatatcattcaacatcttgaaagccaaatgta |
44468170 |
T |
|
| Q |
222 |
cagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaacttcagcggccaatttgggtttgttttgcgtctctcatttgc |
321 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
44468169 |
cagtttctttttttaaacatagcatttggatcatattaagtggtaacaacattcttaacttcagcggccagtttgggtttgttttgcgtctctcatttgc |
44468070 |
T |
|
| Q |
322 |
agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagtatctcgccgtcatcaggaaggatggtttct |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
44468069 |
agccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatacaacacgtccccaagtatctcgccgtcatcaggaaggatggtttct |
44467970 |
T |
|
| Q |
422 |
ggatgaagc |
430 |
Q |
| |
|
||||||||| |
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|
| T |
44467969 |
ggatgaagc |
44467961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 183 - 358
Target Start/End: Original strand, 34502006 - 34502181
Alignment:
| Q |
183 |
cctcagggatatcattcaacatcttgaaagccaaatgtacagtttcnnnnnnnaaacatagcattttgatcatattaagtggtaacaacattcttaactt |
282 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| ||||| ||||| || ||||||||| |||| | |||||| |||||| ||||||| |
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| T |
34502006 |
cctcagggatatcattcaacatctccaaagccagatgtaccgtttcctttcttaaacaaagtattttgatcgtattcaatggtaataacatttttaactt |
34502105 |
T |
|
| Q |
283 |
cagcggccaatttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatattt |
358 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
34502106 |
cagcgaccagtttgggtttgttttgcgtttctcatttgcagccatatagagagcataggcttctttaatcatattt |
34502181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 34501841 - 34501880
Alignment:
| Q |
86 |
cataggcagtaataattatactgatatcgtatattgaagg |
125 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
34501841 |
cataggcagtaataattatactgatatcatatattgaagg |
34501880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 44460843 - 44460804
Alignment:
| Q |
86 |
cataggcagtaataattatactgatatcgtatattgaagg |
125 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
44460843 |
cataggcagtaataattatactgatatcatatattgaagg |
44460804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 44468376 - 44468337
Alignment:
| Q |
86 |
cataggcagtaataattatactgatatcgtatattgaagg |
125 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44468376 |
cataggcagtaataattatactgatatcatatattgaagg |
44468337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 430
Target Start/End: Original strand, 38604846 - 38604983
Alignment:
| Q |
293 |
tttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagta |
392 |
Q |
| |
|
||||| |||||||| ||| |||| |||||||||||| ||| |||||| ||||||||||||||||| ||||| || | ||| ||| | | |||||| || |
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| T |
38604846 |
tttggatttgttttccgtttctcctttgcagccagatagatagcatatgcttctttaatcatattatttttagaagaccaaactaacaagacaccaatta |
38604945 |
T |
|
| Q |
393 |
tctcgccgtcatcaggaaggatggtttctggatgaagc |
430 |
Q |
| |
|
| || || ||||||||||||| |||||||||||||||| |
|
|
| T |
38604946 |
tttcaccatcatcaggaaggagggtttctggatgaagc |
38604983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 293 - 430
Target Start/End: Original strand, 40180344 - 40180481
Alignment:
| Q |
293 |
tttgggtttgttttgcgtctctcatttgcagccagaaagagagcataggcttctttaatcatatttcttttaaaaaagcaatataaaatgtcaccaagta |
392 |
Q |
| |
|
||||||||| |||| ||| |||||||||| ||| || |||||||||||||||||||||||||||| ||||| |||| ||| ||| | | |||||||| |
|
|
| T |
40180344 |
tttgggtttcttttccgtttctcatttgctgcccgatagagagcataggcttctttaatcatattatttttagaaaaccaagttaacaagcgaccaagta |
40180443 |
T |
|
| Q |
393 |
tctcgccgtcatcaggaaggatggtttctggatgaagc |
430 |
Q |
| |
|
||| || ||||||||||||| || ||||| |||||| |
|
|
| T |
40180444 |
tcttaccatcatcaggaaggagagtatctggttgaagc |
40180481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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